Scaffold Ga0126306_10613075

Overview

Basic Information

• Taxon OID: 3300010166
• Scaffold ID: Ga0126306_10613075
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 868
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4282

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011335	Metagenome / Metatranscriptome	292	Y
F031780	Metagenome	181	Y
F105848	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126306_106130751	F105848	N/A	PVKVTGLVAQPWTMQDRSGVSFRAARVEPAITQAKAS*
Ga0126306_106130752	F011335	AGGAG	MMRLDRTAFMPSLAGLEEPDCPACATGWHTRCCHPDLADDGNGELVERCCDGLLISRRRRPLWTR*
Ga0126306_106130753	F031780	GGA	MRTVPPVATAAGLLVGLWLLAPLGLGAAVLVGHLVALLFRSRRERSRPQHAAVREHTHEARRLAAEWPLLAQTLGLGYRDQWTRQHRFPRAEFVADDQGVTATVAAIAGASLADYQRAATYLADTWGCVSVRAEQRAP