NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0131853_10775741

Scaffold Ga0131853_10775741


Overview

Basic Information
Taxon OID3300010162 Open in IMG/M
Scaffold IDGa0131853_10775741 Open in IMG/M
Source Dataset NameLabiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011057Metagenome295Y
F055258Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0131853_107757411F011057N/ASVSLAPVKFGAKDVTTMPRDGAIIFRDLVGKLDVLRVECDRCGRKGQYRVDHLIEQYGIDAKLFDWEPEADCPRKQAKNLNDICGARCPDLSKVV*
Ga0131853_107757412F055258GGAGGMSSEVPIEIEDKPTAVTIMRELVEHLRDTIEALKREIVRNPKSDEYRKALKGTGERLTIAKQILAREEARASHCS*
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