Scaffold Ga0098047_10111079

Overview

Basic Information

• Taxon OID: 3300010155
• Scaffold ID: Ga0098047_10111079
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.201
  • Depth (m): 170

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036024	Metagenome / Metatranscriptome	171	Y
F066274	Metagenome / Metatranscriptome	127	Y
F090490	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098047_101110792	F066274	GAGG	MIELASDEIGWVKYALTRAASTMEGRDPAMTRKEEKLLMRLVRKIEKQEEENLK*
Ga0098047_101110793	F036024	N/A	MGMTTEYRMGRIGDEDTFLKLDEAQKICQAKFAEYISEIKYEDGEEAIDDYAWHIVTPEKFEKDWENDERLKKTDEIKAKYKNLVKNNRVVFFEIDWN*
Ga0098047_101110795	F090490	N/A	MAHLITVTDLNEHELLFNLDTVVSMERGNNGNTIVTTRWSRTDIKETLEEVKSL