Scaffold Ga0126319_1246827

Overview

Basic Information

• Taxon OID: 3300010147
• Scaffold ID: Ga0126319_1246827
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4348
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Big Basin, California
• Coordinates
  • Lat. (^o): 37.1932
  • Long. (^o): -122.2204
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126319_12468274	F000805	AGGAGG	MALPSGSLASGDTPEKAHRFYHYLQGHQETLERAATWHVRWVDLAWMWGFMIAISAALLLWVWQYRSTRQGRTIYPVDSFGGYTTELAGPATFFFLILTVVLTGFAVALIVGHIVFGQKF
Ga0126319_12468275	F001079	AGAAG	MAVEQGSLVLPYVSWASGTFATIPAAKWERVYGSLQALKAHVQEYPGCQKLEAFIALEENGDMRVHCYTVWDTPEQLEAFLERGYTVERMLADVGQIPSDQVQVLEKVF*
Ga0126319_12468276	F000280	AGAAGG	MENEPEQRPARPLVGYRDVGEDVRHSRSSMTRAWVILAVLMALYLGWTLVVYFLEPGLR*
Ga0126319_12468277	F066970	AGG	MWIKHLSSLQFLTYVAFFGVVVAAVFEFMPGRSPPLRREPYPE