Scaffold Ga0126319_1042519

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0126319_1042519

Scaffold Ga0126319_1042519

Overview

Basic Information
Taxon OID	3300010147 Open in IMG/M
Scaffold ID	Ga0126319_1042519 Open in IMG/M
Source Dataset Name	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	875
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	Big Basin, California
Coordinates	Lat. (^o)	37.1932	Long. (^o)	-122.2204	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051252	Metagenome / Metatranscriptome	144	Y
F106130	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126319_10425191	F106130	AGGAG	MKTRIVQNEPNDPAPGEPSVTPTMRSVEVRGRSATTPTNGFRAFVRRRELVIFFALSYLIAWSTLPFGTFLAFAPL
Ga0126319_10425192	F051252	N/A	DRMAQIREITDEMRHLQEQKNEALRMKLRKEVDAKTFREVTAEINAAHDQLAREHKSLTSEAAMPELPDPSLAWEDLSAGDRRALTEMLVDKIVIDPHPHVMDAAGKRHYTIRAIPYQDPQHEAARLKAVHEARVKIVPRV*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.