NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134290_1062894

Scaffold Ga0134290_1062894


Overview

Basic Information
Taxon OID3300010053 Open in IMG/M
Scaffold IDGa0134290_1062894 Open in IMG/M
Source Dataset NameInsect gut microbial communities from Cryptocercus cockroaches from Viginia, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Barcelona
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Intestinal Tract → Insect Gut Microbial Communities From Cryptocercus Cockroaches From Viginia, Usa

Source Dataset Sampling Location
Location NameVirginia, USA
CoordinatesLat. (o)37.5Long. (o)-79.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052004Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0134290_10628941F052004N/AMDVGGEDARWVELAQDRVQWRALVLSMLNLRDLLPES*

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