Scaffold Ga0133945_117970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133945_117970

Scaffold Ga0133945_117970

Overview

Basic Information
Taxon OID	3300010050 Open in IMG/M
Scaffold ID	Ga0133945_117970 Open in IMG/M
Source Dataset Name	Microbial community associated with xenic strain of Nostoc sp. EX-5-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	619
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Xenic Strain → Microbial Community Associated With Xenic Strain Of Nostoc Sp. Ex-5-1

Source Dataset Sampling Location
Location Name	unknown
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014635	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133945_1179701	F014635	GGAG	MFWIGLVGFAACIAVGVAALLVHDRRQRAAFIAGLSSAERERLSGFEKVSGDWHQYRDLLLHH*

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