Scaffold Ga0123356_10000345

Overview

Basic Information

• Taxon OID: 3300010049
• Scaffold ID: Ga0123356_10000345
• Source Dataset Name: Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53562
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007400	Metagenome / Metatranscriptome	352	Y
F086786	Metagenome / Metatranscriptome	110	Y
F100919	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123356_1000034539	F007400	GAG	MPETLAAFRGPVSCTRAAGVPGLTLSGNSAQTPAEKTALAFSSAALPDLPAALHDVVVEHLGGGRYRISSSAGEWTISASVVHLHREIAAQFYRAIPPRPAPARKRLFWRVVLALAASRTGLAALRLLRR*
Ga0123356_1000034549	F100919	N/A	MTMNAFASALYRDLTCAAAALLISVIVGASFVQSTASAPGVHTVAVATQQS*
Ga0123356_1000034551	F086786	AGGAG	MNTFATNLYRDVMCGAAAMLITAVLSLTFVQSTALPPGMHSDGGSFIVVQPAHAWFGQPEPAVLVD*