NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126382_10156743

Scaffold Ga0126382_10156743


Overview

Basic Information
Taxon OID3300010047 Open in IMG/M
Scaffold IDGa0126382_10156743 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010060Metagenome / Metatranscriptome309Y
F041333Metagenome / Metatranscriptome160Y
F059999Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0126382_101567431F059999GGCGGMSNTQVDDWTLVREKFEALVRERSDNIDDLLDAQFCNRFGQLITHATDRARLRAHSGNGRAQAGTRAKIVDEPLDDSDPTFRGTVYALVVITGFCSAALGVSVVFGNN*
Ga0126382_101567432F010060GGAGGMMESVLFTDHSIVVFAIVTGALALIFSVLGLATTSQTRSDIKHQLGVR*
Ga0126382_101567433F041333GGAMTEAGHFSPEIVRNMQVALDLAWSSLSPEQQSQSSKMEVATRILNAAEAGERSPARFLMLALLSASGP*
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