Scaffold Ga0126384_10236499

Overview

Basic Information

• Taxon OID: 3300010046
• Scaffold ID: Ga0126384_10236499
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1468
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002604	Metagenome / Metatranscriptome	544	Y
F007149	Metagenome / Metatranscriptome	357	Y
F050622	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126384_102364992	F007149	AGCAG	MTALTAMDGGGGRNSVQALLAVLLLVGIGAGVAAYHGIFYVTGSQFYEACQQRQAKEKIVGGFQEVEADNPGQAALWASCTPIMGGSMENAGFAIGSSSPQATEDAKALASACPDAAEMPVFPKFWYTVAVDAIEKNGGPSLIDRVAPAGWVIQRAMKARWPRCVDAARPYIAKARKDVTQR*
Ga0126384_102364993	F002604	AGTAG	MLGKLSIIGAVAAILMIPTTLSAQMGGAINPGVHVGGAVNPGATVRGAVERGIPGPDLGTWRSPSGQVHRSRKHTKAATKQRR*
Ga0126384_102364994	F050622	N/A	ESFENNVNKLNNYCYDEKNFKVPIMEAVERVLGK*