Scaffold Ga0126384_10028750

Overview

Basic Information

• Taxon OID: 3300010046
• Scaffold ID: Ga0126384_10028750
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3672
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000892	Metagenome / Metatranscriptome	846	Y
F004562	Metagenome / Metatranscriptome	433	Y
F029228	Metagenome / Metatranscriptome	189	N
F067550	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126384_100287501	F004562	AGG	MSTTVLAYVILFMGFITFLGGLWGVMILIFEEVAKTGRVPFRYYAMMVGLISGGLAMIGVGQALR
Ga0126384_100287505	F067550	AGG	MTSIGKKRELLCHWQRVANLILAKEDVLTVSRALELALFMDAKLDVSSR*
Ga0126384_100287508	F029228	AGGAGG	MNLKNCLSGLGLAALLSLTLAAPANADACSYRMGPFLSQDVAQAAAQQARYLGFEASGVWGRGGLYSDWSNRRYFFNVFYEC*
Ga0126384_100287509	F000892	N/A	RSVPAQTPEQLLELTQEHIRPLIAMIDRLNQAGAEDELKVISRQLTRLVFRAQPLPSGK*