Metagenome / Metatranscriptome Family F067550

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067550
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	55 residues
Representative Sequence	MTGMGKKRELRGHWQRVAKLILAKEDVLTVSRALELALFMDAKLDVSKVLAE
Number of Associated Samples	88
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	30.83 %
% of genes near scaffold ends (potentially truncated)	46.40 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.800 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.000 % of family members)
Environment Ontology (ENVO)	Unclassified (38.400 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.400 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.50% β-sheet: 0.00% Coil/Unstructured: 42.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF13505	OMP_b-brl	2.40
PF05721	PhyH	1.60
PF07045	DUF1330	1.60
PF02796	HTH_7	1.60
PF13924	Lipocalin_5	0.80
PF00216	Bac_DNA_binding	0.80
PF01068	DNA_ligase_A_M	0.80
PF08881	CVNH	0.80
PF09723	Zn-ribbon_8	0.80
PF00166	Cpn10	0.80
PF03631	Virul_fac_BrkB	0.80
PF00589	Phage_integrase	0.80
PF00211	Guanylate_cyc	0.80
PF08388	GIIM	0.80
PF03237	Terminase_6N	0.80
PF00118	Cpn60_TCP1	0.80
PF03781	FGE-sulfatase	0.80
PF12625	Arabinose_bd	0.80
PF00353	HemolysinCabind	0.80
PF04392	ABC_sub_bind	0.80
PF13481	AAA_25	0.80
PF03401	TctC	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.60
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.60
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.80
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.80
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.80
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.80
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.80
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.80
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.80 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.80 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.80 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.20 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.20 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.20 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	32.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.20 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.40 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.80 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.20 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.80 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.80 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.80 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.20 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.00 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.80 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.80 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.20 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.00 %
Hyphomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	0.80 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.80 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10008572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2815	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10020233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1594	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10057052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300000956\|JGI10216J12902_111141467	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300000956\|JGI10216J12902_121454391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2381	Open in IMG/M
3300005174\|Ga0066680_10449480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	814	Open in IMG/M
3300005178\|Ga0066688_10555182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	738	Open in IMG/M
3300005179\|Ga0066684_10543760	Not Available	779	Open in IMG/M
3300005187\|Ga0066675_10073767	All Organisms → cellular organisms → Bacteria	2179	Open in IMG/M
3300005187\|Ga0066675_10414550	Not Available	996	Open in IMG/M
3300005332\|Ga0066388_101307427	Not Available	1251	Open in IMG/M
3300005332\|Ga0066388_102576713	Not Available	926	Open in IMG/M
3300005332\|Ga0066388_103862498	Not Available	764	Open in IMG/M
3300005332\|Ga0066388_104093117	Not Available	743	Open in IMG/M
3300005332\|Ga0066388_107467536	Not Available	549	Open in IMG/M
3300005363\|Ga0008090_10117546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1800	Open in IMG/M
3300005436\|Ga0070713_100471308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1182	Open in IMG/M
3300005437\|Ga0070710_10145628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1457	Open in IMG/M
3300005467\|Ga0070706_101666096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	581	Open in IMG/M
3300005536\|Ga0070697_101063842	Not Available	720	Open in IMG/M
3300005713\|Ga0066905_100031807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3004	Open in IMG/M
3300005713\|Ga0066905_101022992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300005713\|Ga0066905_101111726	Not Available	702	Open in IMG/M
3300005713\|Ga0066905_102046948	Not Available	532	Open in IMG/M
3300005764\|Ga0066903_100069171	Not Available	4499	Open in IMG/M
3300005764\|Ga0066903_100070941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4457	Open in IMG/M
3300005764\|Ga0066903_101111520	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300005764\|Ga0066903_104434241	Not Available	749	Open in IMG/M
3300005764\|Ga0066903_106360709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300005764\|Ga0066903_106841013	Not Available	592	Open in IMG/M
3300005764\|Ga0066903_107485008	Not Available	563	Open in IMG/M
3300005764\|Ga0066903_107672576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300005937\|Ga0081455_10001293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31137	Open in IMG/M
3300006046\|Ga0066652_101009750	Not Available	789	Open in IMG/M
3300006800\|Ga0066660_10385467	Not Available	1151	Open in IMG/M
3300006800\|Ga0066660_11375274	Not Available	553	Open in IMG/M
3300006845\|Ga0075421_100033688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6485	Open in IMG/M
3300006969\|Ga0075419_10739652	Not Available	700	Open in IMG/M
3300009012\|Ga0066710_101750076	Not Available	942	Open in IMG/M
3300009147\|Ga0114129_10383349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1856	Open in IMG/M
3300009792\|Ga0126374_10394891	Not Available	964	Open in IMG/M
3300010041\|Ga0126312_10927090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300010046\|Ga0126384_10028750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3672	Open in IMG/M
3300010047\|Ga0126382_10209283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1395	Open in IMG/M
3300010048\|Ga0126373_10837693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	982	Open in IMG/M
3300010048\|Ga0126373_12388704	Not Available	588	Open in IMG/M
3300010335\|Ga0134063_10671865	Not Available	533	Open in IMG/M
3300010358\|Ga0126370_12328364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300010361\|Ga0126378_11348074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300010362\|Ga0126377_11796577	Not Available	688	Open in IMG/M
3300010366\|Ga0126379_13349849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300010398\|Ga0126383_11520292	Not Available	759	Open in IMG/M
3300010398\|Ga0126383_11969499	Not Available	672	Open in IMG/M
3300010398\|Ga0126383_13495730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300010863\|Ga0124850_1003419	All Organisms → cellular organisms → Bacteria	4796	Open in IMG/M
3300012205\|Ga0137362_11229154	Not Available	634	Open in IMG/M
3300012357\|Ga0137384_11087860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300012358\|Ga0137368_10329910	Not Available	1021	Open in IMG/M
3300012360\|Ga0137375_10570308	Not Available	948	Open in IMG/M
3300012361\|Ga0137360_10701408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	869	Open in IMG/M
3300012927\|Ga0137416_10559065	Not Available	992	Open in IMG/M
3300016294\|Ga0182041_11918040	Not Available	551	Open in IMG/M
3300016357\|Ga0182032_11106182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300016387\|Ga0182040_10078227	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300016404\|Ga0182037_10098259	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300016404\|Ga0182037_10289776	Not Available	1311	Open in IMG/M
3300016404\|Ga0182037_10843638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300016445\|Ga0182038_10734977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	861	Open in IMG/M
3300016445\|Ga0182038_10893951	Not Available	782	Open in IMG/M
3300021560\|Ga0126371_11473528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300025898\|Ga0207692_10207658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1155	Open in IMG/M
3300025905\|Ga0207685_10075469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1379	Open in IMG/M
3300025928\|Ga0207700_11124428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300025929\|Ga0207664_10255993	Not Available	1529	Open in IMG/M
3300026523\|Ga0209808_1133505	Not Available	994	Open in IMG/M
3300026547\|Ga0209156_10297246	Not Available	730	Open in IMG/M
3300027654\|Ga0209799_1081545	Not Available	730	Open in IMG/M
3300027903\|Ga0209488_10088089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2316	Open in IMG/M
3300027909\|Ga0209382_10229469	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300028787\|Ga0307323_10350868	Not Available	529	Open in IMG/M
3300031231\|Ga0170824_114648081	Not Available	580	Open in IMG/M
3300031474\|Ga0170818_111559973	Not Available	569	Open in IMG/M
3300031543\|Ga0318516_10056905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2141	Open in IMG/M
3300031543\|Ga0318516_10102245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1620	Open in IMG/M
3300031543\|Ga0318516_10222684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1091	Open in IMG/M
3300031561\|Ga0318528_10115725	Not Available	1415	Open in IMG/M
3300031561\|Ga0318528_10663836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300031573\|Ga0310915_10140429	Not Available	1664	Open in IMG/M
3300031573\|Ga0310915_10182917	Not Available	1460	Open in IMG/M
3300031682\|Ga0318560_10113219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1413	Open in IMG/M
3300031682\|Ga0318560_10156792	Not Available	1206	Open in IMG/M
3300031682\|Ga0318560_10625067	Not Available	583	Open in IMG/M
3300031747\|Ga0318502_10787564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300031751\|Ga0318494_10367429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	833	Open in IMG/M
3300031763\|Ga0318537_10019125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2373	Open in IMG/M
3300031764\|Ga0318535_10357239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300031765\|Ga0318554_10166859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1251	Open in IMG/M
3300031771\|Ga0318546_10383371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	980	Open in IMG/M
3300031792\|Ga0318529_10618832	Not Available	502	Open in IMG/M
3300031794\|Ga0318503_10063063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1144	Open in IMG/M
3300031794\|Ga0318503_10107352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300031833\|Ga0310917_10763567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300031859\|Ga0318527_10439191	Not Available	556	Open in IMG/M
3300031860\|Ga0318495_10088992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1385	Open in IMG/M
3300031879\|Ga0306919_10418432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1029	Open in IMG/M
3300031879\|Ga0306919_11097919	Not Available	606	Open in IMG/M
3300031879\|Ga0306919_11469720	Not Available	513	Open in IMG/M
3300031910\|Ga0306923_10242821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2060	Open in IMG/M
3300031912\|Ga0306921_12475937	Not Available	539	Open in IMG/M
3300031941\|Ga0310912_11275793	Not Available	557	Open in IMG/M
3300031981\|Ga0318531_10016482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2884	Open in IMG/M
3300032010\|Ga0318569_10426810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300032025\|Ga0318507_10027022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2105	Open in IMG/M
3300032025\|Ga0318507_10053141	Not Available	1598	Open in IMG/M
3300032039\|Ga0318559_10247605	Not Available	824	Open in IMG/M
3300032041\|Ga0318549_10415479	Not Available	606	Open in IMG/M
3300032055\|Ga0318575_10618160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300032063\|Ga0318504_10089302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1366	Open in IMG/M
3300032064\|Ga0318510_10178960	Not Available	849	Open in IMG/M
3300032065\|Ga0318513_10035739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2169	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.00%
Host-Associated	Host-Associated	4.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.00%
Plants	Host-Associated → Plants	4.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.60%
Loam	Environmental → Terrestrial → Soil → Loam	22.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.20%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.40%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.80%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.80%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.80%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100085724	3300000597	Forest Soil	MTGMGKKRELRSQWQRVAKLILAKTDVQTVSKALELALFYDAKLDITAMA*
AF_2010_repII_A001DRAFT_100202333	3300000793	Forest Soil	TIRDAVDYMTGIGKKRELRSQWQRVAKLILAQEDVRTVSRALELALFYDAKLDVSKVPAK
AF_2010_repII_A001DRAFT_100570521	3300000793	Forest Soil	QPLPTKDGGTLRTIREACDYMTSMGKKRELRQHWQRACKLILAKADVVSVSRSLELALFTDAKLDVGA*
JGI1027J12803_1021855961	3300000955	Soil	AITGSGAAKLILAKADVLTVSGALELALFMDAKLHVSKVPAE*
JGI10216J12902_1111414673	3300000956	Soil	MTSIGKQRERRHHWQRTCKLILAKADVKTVSWALELALFMDAKLEVSKIPAK*
JGI10216J12902_1214543913	3300000956	Soil	LPIKRGTTLRTLAQAVDYMTSIGKKRELLSHWQRVAKLVLAKEDVLTVSRALGLALFMDRI*
Ga0066680_104494803	3300005174	Soil	VGLCKNELRQQWERAAKLILAQADVVTVSRALELALFYDAKLDVSKVPAK*
Ga0066688_105551823	3300005178	Soil	IRDACDYMTGMGKQRELRSHWQRACKLILAKADVMTVSWALELALFMDAKLDVSKVQ*
Ga0066684_105437602	3300005179	Soil	LHMIGQAVDYMTCIGSKRELLQRWQRVAKLILAKEDALTVSRALELALFMDAKLDVSKFPAE*
Ga0066675_100737672	3300005187	Soil	MTSIGNQRERRQQWQRACNLILAKANVVTVSRALELALFMDAKLEVSKVPAK*
Ga0066675_104145502	3300005187	Soil	MIGQAVDYMTCIGSKRELLQRWQRVAKLILAKEDALTVSRALELALFMDAKLDVSKFPAE
Ga0066388_1013074271	3300005332	Tropical Forest Soil	MDEKRELRSRWQRVAKLILAKEDLRTVIRALELARFMDTKFDVAALA*
Ga0066388_1025767132	3300005332	Tropical Forest Soil	MTGMGKQRELRSHWQRACKLILAKANVMTVSRTLELALFMHAKFDVSKIPAE*
Ga0066388_1038624981	3300005332	Tropical Forest Soil	MTGMGKQRELRSHWQRACKLILAKADVVAVSRALELALFMDAKLDVSKVTAGAQGRRQ*
Ga0066388_1040931173	3300005332	Tropical Forest Soil	CRPKTAARCAIREACNYMTAMDKKREMRQHWQRKLIPAKADVVTVSRALELALFMDAKLDVSNVQAK*
Ga0066388_1074675361	3300005332	Tropical Forest Soil	MDRKRERLDQWQRICKLILAKEDVLIVSRALELALFMDAKLDVS
Ga0008090_101175463	3300005363	Tropical Rainforest Soil	MTGIGKKRELRSQWQRVAKLILAQEDVRTVSRALELALFYDAKLDVSKVPAK*
Ga0070713_1004713082	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTAMDKQRERRQRWQRVAKLILAKENVLTVTRALELALFMDAKLDVAKVSAK*
Ga0070710_101456284	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDKQRERRQRWQRVAKLILAKENVLTVTRALELALFMDAKLDVAKVSAK*
Ga0070706_1016660962	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ELRSQWQRVAKLILAQNDVVTVSRALELALFMDAKLDVSKVPAE*
Ga0070697_1010638423	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IGKKRELLNHWQRVAKLILAKEDVLTVSRALELALFMDAKLDVSKVPAK*
Ga0066905_1000318072	3300005713	Tropical Forest Soil	MSEDGKQRELRSHWQRVCKLILARTNVLIVSRALELALFMDAKLDVTAMA*
Ga0066905_1010229922	3300005713	Tropical Forest Soil	EYMTVMGKQRELRQHWQRAAKLILAKADVLPVGRALELALFMDAKLDVSKATAK*
Ga0066905_1011117262	3300005713	Tropical Forest Soil	MGKQRELRDHWQRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK*
Ga0066905_1020469481	3300005713	Tropical Forest Soil	MTGIGKQRELRSDWQRACKLILAKEDVLTVSRALELALFMDAKLDVSKKL*
Ga0066903_1000691716	3300005764	Tropical Forest Soil	MDEKRELRSRWQRVAKLILAKEDLLTVIRALELARFMDTKFDVAALA*
Ga0066903_10007094111	3300005764	Tropical Forest Soil	MTAMDKKREMRQHWQRKLIPAKADVVTVSRALELALFMDAKLDVSNVQAK*
Ga0066903_1011115204	3300005764	Tropical Forest Soil	MTGMGKKRELRSQWQRVAKLILAEEDVATVSRALELALFVDAKLDVKSR*
Ga0066903_1019390693	3300005764	Tropical Forest Soil	VRSQWQRVAKLVLGNADVATVSRALELALFMDAKLDVSKVPASRG*
Ga0066903_1044342412	3300005764	Tropical Forest Soil	MTAMDKKRELRSHWQRACKLILAEEDVTAISRALELALFYDAKLDVSKVPAK*
Ga0066903_1063607091	3300005764	Tropical Forest Soil	YMTGIGKQRELRSHWQRVCKLILAKADVVTVSRALELALFMDAKLDVSKVPAGAQGGRQ*
Ga0066903_1068410131	3300005764	Tropical Forest Soil	MTNMDKKRELGSHWQRACKLILAKEDVMTVSRALELALFMDAKLDVSKMLAE*
Ga0066903_1074850081	3300005764	Tropical Forest Soil	TLRTIGEACDYMTGMDKKRELRSHWQRVCKLILAKEDVMTVRRALELALFMDAKLDVGA*
Ga0066903_1076725761	3300005764	Tropical Forest Soil	DGGTLRTIRDACDYMTGMDKKRELRSQWQRAAKLILAEADVTAVSRALELALFYDAKLDVSKVPAK*
Ga0081455_1000129324	3300005937	Tabebuia Heterophylla Rhizosphere	MTSVGGKREQRSDWQRIAKLILAKEDVLTISRAVELAPFMDAKLHVSKVE*
Ga0066652_1010097502	3300006046	Soil	MTAMGKQREARQHWQRAAKLILLKNVMTVSRALELALFIDAKLDVSKVE*
Ga0066660_103854672	3300006800	Soil	YMTSIGNQRERRPHWQRACKLILAKADVMTVSRALELALFMDAKLDVVKVPAK*
Ga0066660_113752741	3300006800	Soil	GGPTLHTIGQAVDYMTCIGSKRELLQRWQRVAKLILAKEDALTVSRELELALFMEAKLDVSKFPAD*
Ga0075421_1000336887	3300006845	Populus Rhizosphere	MTSMGKKREPLNDWQRVLILAKEDLLTVSRGLELAVFMDAKLDLSKVPAK*
Ga0075419_107396522	3300006969	Populus Rhizosphere	MTSMGKKREPLNDWQRVLILAKEDVLTVSRGLELALFMDAKLDLSKVPAK*
Ga0066710_1017500761	3300009012	Grasslands Soil	DYMTSIGNQRERRPHWQRACKLILAKADVMTVSRALELALFMDAKLDVVKVPAK
Ga0114129_103833495	3300009147	Populus Rhizosphere	LPTKDGGTLHTIGQAVDYMTGIGKRRELLNHWQRVAKLILAKEDVLTVSRALEMALFMDAKLDVSQL*
Ga0126374_103948912	3300009792	Tropical Forest Soil	MTGIGKKRELRSQWQRVAKLILAQEDVRTVSRALELALFYDAKLDVSKVTAGAQGRRQ*
Ga0126312_109270901	3300010041	Serpentine Soil	MTGMGKKRELRSHWQRACKLILAKEDVLTVSRALELALFMDPKLDVSKVPAE*
Ga0126384_100287505	3300010046	Tropical Forest Soil	MTSIGKKRELLCHWQRVANLILAKEDVLTVSRALELALFMDAKLDVSSR*
Ga0126384_118685601	3300010046	Tropical Forest Soil	LRSQWQRVAKLILAKEDVMTVSRALELALFKDAKLDVSKVPAK*
Ga0126382_102092833	3300010047	Tropical Forest Soil	MTGMAKQRELCSHWQRVCKLILAKTDVQTVSRALELALFYDAKLDVSKVPAK*
Ga0126373_108376932	3300010048	Tropical Forest Soil	MTGMGKKRELRSQWQRGAKLILAKTDVQTVSKALELALFYDAKLDITAMA*
Ga0126373_123887042	3300010048	Tropical Forest Soil	MTGMGRQRELRDHWQRACRLILANADVVAVSKALELALFMDAKLDVSKVPAK*
Ga0134063_106718651	3300010335	Grasslands Soil	LHTIGQAVDYMTCIGSKRELLQRWQRVAKLILAKEDALTVSRALELALFMDAKLDVSKFPAE*
Ga0126370_123283642	3300010358	Tropical Forest Soil	MTGMGKKRELRSQWQRVAKLILAKEDVRTVSGALELALFMDAKLDVSKVPVE*
Ga0126378_113480742	3300010361	Tropical Forest Soil	MTGIGKKRELRSQWQRVAKLILAKTDVQTVSKALELALFYDAKLDITAMA*
Ga0126377_117965772	3300010362	Tropical Forest Soil	MTSRGKQRELRHHWQRAAKLIAKADVLTVSRAPELALFMDAKLDVSK
Ga0126379_133498492	3300010366	Tropical Forest Soil	GIGKKRELRSQWQRVAKLILAQEDVRTVSRALELALFYDAKLDVSKVPAK*
Ga0126383_115202922	3300010398	Tropical Forest Soil	RDACDYMTGIGKKRELRDHWQRACKLILAKADVVAVSRALELALFMDAKLDVSKILAK*
Ga0126383_119694991	3300010398	Tropical Forest Soil	LRTVRDACDYMTAIDRKRELRKHWQHVCKLILAEADMLTVSRALELALFMDAKLQVSKVPA*
Ga0126383_134957302	3300010398	Tropical Forest Soil	MGKQRELRSHWQRVCKLILARTNVLIVSRALELALFMDAKLDVTAMA*
Ga0124850_10034193	3300010863	Tropical Forest Soil	MTGMGKQRKLRDHWQRACRLILANADVVAVSKALELALFMDAKLDVSKVPAK*
Ga0137362_112291541	3300012205	Vadose Zone Soil	MTDMGRKRELRQHWQRACQLILAHADVFAVSRALELALFMDAKLDVSGKRTARIS*
Ga0137384_110878601	3300012357	Vadose Zone Soil	DGGTLRTIRDPCDYMTSMDKKRELRTHWQRVANLILAKEDVLTVSRALELALFMDAKLDVSQL*
Ga0137368_103299101	3300012358	Vadose Zone Soil	MTGMGKKRELRGHWQRVAKLILAKEDVLTVSRALELALFMDAKLDVSKVLAE*
Ga0137375_105703081	3300012360	Vadose Zone Soil	MTGMGKKRELRGHWQRVAKLILAKEDVLTVSRALELALFMDAKLDVSKVA*
Ga0137360_107014083	3300012361	Vadose Zone Soil	KRELLNHWQRVAKLVLAKEDVLTVSRALELALFMDAKLEVSKV*
Ga0137416_105590654	3300012927	Vadose Zone Soil	CHYMTAMDKRRELRQRWQRVAKLILAKENVLTVSRALELALFMDAKLDVLKVPAE*
Ga0182041_119180401	3300016294	Soil	DGGTLRTIGQAVDYMTGMGKKRELRSQWQRVAKLILAKADVQAVSRALELALFYDAKLDVSKVATK
Ga0182032_111061822	3300016357	Soil	VRKTSWSCRHIELSTRLTGIGKQRELRSHWQRACKLILAKEDVLTVSRLELALFMDAKLDVSKVPAE
Ga0182040_100782271	3300016387	Soil	GKKRELRSQWQRVAKLILAQEDVATVSRALEQALFYDAKLDVSKVPAGAQGRRQ
Ga0182037_100982595	3300016404	Soil	LRTIREACDYMTGMGKKRELRSQWQRVAKLILAQEDVATVSRALEQALFYDAKLDVSKVPAGAQGRRQ
Ga0182037_102897762	3300016404	Soil	LRTIHEACDYTTGMGKQRELRDHWQRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK
Ga0182037_108436381	3300016404	Soil	REACDYMTSMGKKRELRQHWQRACKLILAKADVVSVSRSLELALFMDAKLDVGA
Ga0182038_107349772	3300016445	Soil	GTLRTVREACDYMTSMGKKRELRQHWQRACKLILAKADVVSVSRSLELALFMDAKLDVGA
Ga0182038_108939511	3300016445	Soil	GGVLTTIGQAVNYMTGIGKKRELRSQWQRVAKLILAKEDVLTVSRALELALFSDAKLDVSEIPAK
Ga0126371_114735281	3300021560	Tropical Forest Soil	MTGIGKKRELRSQWQRVAKLILAKTDVQTVSKALELALFYDAKLDITAMA
Ga0207692_102076581	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MDKQRERRQRWQRVAKLILAKENVLTVTRALELALFMDAKLDVAKVSAK
Ga0207685_100754693	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTAMDKQRERRQRWQRVAKLILAKENVLTVTRALELALFMDAKLDVSKVSAK
Ga0207700_111244281	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RRGVRLHTAMDKQRERRQRWQRVAKLILAKENVLTVTRALELALFMDAKLDVAKVSAK
Ga0207664_102559931	3300025929	Agricultural Soil	RTISEACDYMTAMNKQRELRQRWQRVAKLILAKENVLTVTRALELALFMDAKLDVAKVSA
Ga0209808_11335051	3300026523	Soil	LHMIGQAVDYMTCIGSKRELLQRWQRVAKLILAKEDALTVSRALELALFMDAKLDVSKFPAE
Ga0209156_102972462	3300026547	Soil	MIGQAVDYMTCIGSKRELLQRWQRVAKLILAKEDALTVSRALELALFMDAKL
Ga0209799_10815452	3300027654	Tropical Forest Soil	LRTIREACDYMTGMAKQRELCSHWQRVCKLILAKTDVQTISRALELPLFYDAKLDVSKVPAK
Ga0209488_100880891	3300027903	Vadose Zone Soil	MTAMDKQRELRQRWQRVAKLILAKENVLTVSRALELALFMDAKLDVAKVSAK
Ga0209382_102294692	3300027909	Populus Rhizosphere	MTSMGKKREPLNDWQRVLILAKEDLLTVSRGLELAVFMDAKLDLSKVPAK
Ga0307323_103508682	3300028787	Soil	MTAMGKQREARQHWQRAAKLILSKSDVMAVSRALELALFMDAKLDVSKVQ
Ga0170824_1146480812	3300031231	Forest Soil	MMIWRPSFASNMDNQRELRQRWQRVAKLILAKENVLTVSRALELARFRDAKLDLSKVPAE
Ga0170818_1115599732	3300031474	Forest Soil	MMIWRPSFASNMDNQRELRQRWQRVAKLILAKENVQTVSRALELALFMDAKLDVAKVSAK
Ga0318516_100569052	3300031543	Soil	MTGMGKQRELRRQWQRVAKLILAKEDVTTVSRAPELALFMDAKLDVSKVPAK
Ga0318516_101022453	3300031543	Soil	MTNMDKKRELGSHWQRACKLILAKEDVMTVSRALELALFMDAKLDVSKMLAE
Ga0318516_102226842	3300031543	Soil	MRVQRELRSHWQRVCKLILAKTDVQTVSRALELALFMDAKLDVSKVPAK
Ga0318528_101157252	3300031561	Soil	MTGMGKKRELRSQWQRVAKLILAKADVQAVSRALELALFYDAKLDVSKVATK
Ga0318528_106638362	3300031561	Soil	DGGTLRTIRDACDYMTGMGKQRELRTQWQRVAKLILAKEDARTVSRALELALFMDAKLDVSKVPAK
Ga0310915_101404292	3300031573	Soil	MTGMGKKRELRQHWQRACKLILAHADVFAVSRALELALFMDAKLDVSKV
Ga0310915_101829173	3300031573	Soil	SLIRRHRAKDGGTLRTIHEACDYMTGMGKRRKLRDHWKRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK
Ga0318560_101132191	3300031682	Soil	RELRSQWQRVAKLILAKEDVRTVSRALELALFMDAKLDVSKVPAK
Ga0318560_101567921	3300031682	Soil	IGQAVNYMTGIGKKRELRSQWQRVAKLILAKEDVLTVSRALELALFSDAKLDVSEIPAK
Ga0318560_106250673	3300031682	Soil	RDACDYMTSMGKKRELRSQWQRVAKLILAKADVQAVSRALELALFYDAKLDVSKVATK
Ga0318502_107875642	3300031747	Soil	LRTIRDACDYMTSMDKKRELRSQWQRVAKLILAKEDVRTVSRALELALFMDAKLDVSKVPAK
Ga0318494_103674292	3300031751	Soil	GMGKKRELCQHWQRACKLILAQADVVTVRALELALFYDAKLDVAPMA
Ga0318537_100191251	3300031763	Soil	PSTMRVQRELRSHWQRVCKLILAKTDVQTVSRALELALFMDAKLDVSKVPAK
Ga0318535_103572391	3300031764	Soil	PTKDGGTLRTIREACDYMTGMGKKRELCQHWQRACKLILAQADVVTVRALELALFYDAKLDVAPMA
Ga0318554_101668593	3300031765	Soil	TGMGKKRELCQHWQRACKLILAQADVVTVRALELALFYDAKLDVAPMA
Ga0318554_103700803	3300031765	Soil	KLRDHWKRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK
Ga0318546_103833711	3300031771	Soil	MGKQRELRRQWQRVAKLILAKEDVTTVSRAPELALFMDAKLDVSKVPAK
Ga0318529_106188322	3300031792	Soil	MTGMGKQRELRRQWQRVAKLILAKEDVTTVSRAPELALFMDAKLDVSKV
Ga0318503_100630633	3300031794	Soil	TLRTIRDACDCMTGMGKQRELRRQWQRVAKLILAKEDVTTVSRAPELALFMDAKLDVSKVPAK
Ga0318503_101073521	3300031794	Soil	AMRVQRELRSHWQRVCKLILAKTDVQTVSRALELALFMDAKLDVSKVPAK
Ga0310917_107635672	3300031833	Soil	ACDYMTGMGKQRELRTQWQRVAKLILAKEDARTVSRALELALFMDAKLDVSKVPAK
Ga0318527_104391911	3300031859	Soil	MTGMGKKRELCQHWQRACKLILAQADVVTVRALELALFYDAKLDVAPMA
Ga0318495_100889921	3300031860	Soil	MGKKRELCQHWQRACKLILAQADVVTVRALELALFYDAKLDVAPMA
Ga0306919_104184321	3300031879	Soil	MTSMGKKRELRQHWQRACKLILAKADVVSVSRSLELALFMDAKLDVGA
Ga0306919_110979192	3300031879	Soil	LRTIHEACDYMTGMGKRRKLRDHWKRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK
Ga0306919_114697201	3300031879	Soil	LTTIGQAVNYMTGIGKKRELRSQWQRVAKLILAKEDVLTVSRALELALFSDAKLDVSEIPAK
Ga0306923_102428214	3300031910	Soil	LRTVREACDYMTSMGKKRELRQHWQRACKLILAKADVVSVSRSLELALFMDAKLDVGA
Ga0306921_124759372	3300031912	Soil	LSTRLTGIGKQRELRSHWQRACKLILAKEDVLTVSRLELALFMDAKLDVSKVPAE
Ga0310912_112757931	3300031941	Soil	DGGVLTTIGQAVNYMTGIGKKRELRSQWQRVAKLILAKEDVLTVSRALELALFSDAKLDVSEIPAK
Ga0318531_100164828	3300031981	Soil	GKQRELRTQWQRVAKLILAKEDARTVSRALELALFMDAKLDVSKVPAK
Ga0318563_105978672	3300032009	Soil	LRSHWQRVCKLILAKTDVQTVSRALELALFMDAKLDVSKVPAK
Ga0318569_104268102	3300032010	Soil	DYMTSMDKKRELRSQWQRVAKLILAKEDVRTVSRALELALFMDAKLDVSKVPAK
Ga0318507_100270221	3300032025	Soil	APPDQDGGTLRTIGQAVDYMTGMGKKRELRSQWQRVAKLILAKADVQAVSRALELALFYDAKLDVSKVATK
Ga0318507_100531411	3300032025	Soil	LRTIHEACDYMTGMGKQRKLRDHWQRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK
Ga0318559_102476053	3300032039	Soil	HTIHEACDYMTGMGKRRKLRDHWKRACRLILANADVVAVSRALELALFMDAKLDVSKVPA
Ga0318549_104154791	3300032041	Soil	GTLRTIHEACDYMTGMGKRRKLRDHWKRACRLILANADVVAVSRALELALFMDAKLDVSKVPAK
Ga0318575_106181602	3300032055	Soil	RTIRDACDYMTSMDKKRELRSQWQRVAKLILAKEDVRTVSRALELALFMDAKLDVSKVPA
Ga0318504_100893021	3300032063	Soil	MDKKRELRSQWQRVAKLILAKEDVRTVSRALELALFMDAKLDVSKVPAK
Ga0318510_101789601	3300032064	Soil	RTIGQAVDYMTGMGKKRELRSQWQRVAKLILAKADVQAVSRALELALFYDAKLDVSKVAT
Ga0318513_100357394	3300032065	Soil	MTGMGKKRELRDHWRRACKLILAKADVQTVSRVLELALFMDAKLDVSKVPAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067550

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences