NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126311_10290850

Scaffold Ga0126311_10290850


Overview

Basic Information
Taxon OID3300010045 Open in IMG/M
Scaffold IDGa0126311_10290850 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1227
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8712Long. (o)-122.4276Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031780Metagenome181Y
F105848Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0126311_102908501F105848N/AQGIPVKVTGLVAQPWTMADRSGVSFRAARVEPAIAQAKAS*
Ga0126311_102908504F031780GGAMPTILPLASLAGLLAGLWLLVIPGGGLLVLAGQLLARVVRSHRDRRHPQRAAVREQTRQACRLAAEWPLLAQTLRLGYQDQLTRQHRFPAAEFAADGQGVTATVAAIAGANLADYQRAAAYLADTWGCVTVRAEQQGPGLIRLRGLHRDPLLAPAPVDLPGTAPASLDSWWLGWAE

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