Scaffold Ga0126311_10000003

Overview

Basic Information

• Taxon OID: 3300010045
• Scaffold ID: Ga0126311_10000003
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 300912
• Total Scaffold Genes: 257
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 161 (62.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8712
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000719	Metagenome	923	Y
F004395	Metagenome	440	Y
F041276	Metagenome	160	Y
F054335	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126311_1000000314	F004395	AGGAG	MYRYRFPLLLLFITATFASLPASVTLRAQEVEDTIKIKTRVVFLDALVKDKKTSLPISNLTTDNFQVLDDGKTRNISYFTREAQARKPLALILILDLREDGAGRFLKRTEILKAMEDELAKLPPGDEVAIMAMDMNNEDEERLWLTEFTNDRAKLAAALARVPAMCVPHEGQPPQTDSTAVAKTNDSVPGKPDDIVETETIRGRNGGTVIRETHRDGSVNVKRMNKKGDVTIELGDIYDMAAAVKDASRKAEQTRPNSQLSIVWVSDGIAPIFFEDRDASEQILIRHNVIFNSLTVELRTLFKFLLPVGKPIAGWLGMSLYGSAKHLAGRSGGEAVKVGRPKDYGVGLSRIIGNLTARYSLGFALAEDEIDDGRMHNLEVRVKAQDEKGKNRKLQVSSRQGYYMSSTIPKDAAAKAQF*
Ga0126311_1000000315	F000719	GAGG	MKAITTKLLLVAMIFTTANAAPTKDDDFNSVVKMIEQFYRVKHVGIPFLAKAGMKVATTAARIKGGQARRIAEAGSIKLAVFEDQDFNGDFTKFRASLNEALNATWMPLVQTLSPQDEEQVYIFLRDAGEKVHVLVITIEQRDATVVQATLSPKNLALLLKDPEGTGKSITQEAAIIDQE
Ga0126311_10000003152	F041276	N/A	VPFVAKIIITMQMKVLILIVFAFLLQSPQTPKYDPASYIPAVRAGKTVTVRGENLADRIQAAQDDASVATVRIEGGGSIAKQVTLRKHTVFDSSTYSCDMQGITDQGQFLVADGVLVEGTWRMPKELLDYFKFGNGRNWQDPYLLKVQALTAEQLAGTGTTIIEPTYVNGPNPAIEVFQALGDTIGSHTGAARDIAVVGFHIKGRQKVYDGGVRSTILFGNCVRCTVQNNYLEDTGSIGITFGGSALEKNNYSNQGLIWHNVTSGVAAANMAAINSENLLVIENYVRRPGHHDPQFGGGVCGFDLETNSAADHTKNIGVFNNLMDYEDAGLESAGNALCLQDPYLGPNHGKVTAANNILIGGRSEHSNHRYMSNGLFLVGLKQCEITNNYVFRTGQNALQAYKLDGCLVQDNDFESTGGGGNSTVMLNGVLNSIFRRNHYRSRPGVTINTQAGIIDKCGKGNVFEDNRTNGQVTPSATVCP*
Ga0126311_10000003251	F054335	GAG	MLWWVGSGLILAWLILRFVKPMGWIPILLLSGICVLIIQIAAYRKTKSHR*