Metagenome / Metatranscriptome Family F054335

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054335
Family Type	Metagenome / Metatranscriptome
Number of Sequences	140
Average Sequence Length	51 residues
Representative Sequence	MLWWVGSGLILAWLILRLVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR
Number of Associated Samples	98
Number of Associated Scaffolds	140

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.86 %
% of genes near scaffold ends (potentially truncated)	31.43 %
% of genes from short scaffolds (< 2000 bps)	78.57 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.857 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (8.571 % of family members)
Environment Ontology (ENVO)	Unclassified (47.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 140 Family Scaffolds
PF00486	Trans_reg_C	63.57
PF00664	ABC_membrane	7.14
PF14346	DUF4398	1.43
PF00072	Response_reg	0.71
PF05187	ETF_QO	0.71
PF02390	Methyltransf_4	0.71
PF02954	HTH_8	0.71
PF08340	DUF1732	0.71
PF00691	OmpA	0.71
PF01596	Methyltransf_3	0.71
PF00067	p450	0.71
PF02518	HATPase_c	0.71

COG ID	Name	Functional Category	% Frequency in 140 Family Scaffolds
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.43
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.71
COG0220	tRNA G46 N7-methylase TrmB	Translation, ribosomal structure and biogenesis [J]	0.71
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.71
COG1561	Endoribonuclease YloC, YicC family	Translation, ribosomal structure and biogenesis [J]	0.71
COG2124	Cytochrome P450	Defense mechanisms [V]	0.71
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.71
COG2440	Ferredoxin-like protein FixX	Energy production and conversion [C]	0.71
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.71
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.71

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.86 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.86 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.86 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	68.57 %
Unclassified	root	N/A	12.14 %

Name	Rank	Taxonomy	Distribution
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	29.29 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.00 %
Unclassified	root	N/A	12.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.71 %

Name	Rank	Taxonomy	Distribution
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	29.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Unclassified	root	N/A	12.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.71 %

Name	Rank	Taxonomy	Distribution
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	29.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Unclassified	root	N/A	12.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.71 %

Name	Rank	Taxonomy	Distribution
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	29.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Unclassified	root	N/A	12.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.71 %

Name	Rank	Taxonomy	Distribution
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	29.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.00 %
Unclassified	root	N/A	12.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_2345949	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300000531\|CNBas_1006129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300000891\|JGI10214J12806_10511641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300000953\|JGI11615J12901_10187512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300000956\|JGI10216J12902_122470509	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300003203\|JGI25406J46586_10005435	All Organisms → cellular organisms → Bacteria → Acidobacteria	5910	Open in IMG/M
3300003319\|soilL2_10039421	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300004114\|Ga0062593_102207651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300004114\|Ga0062593_102736912	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300004157\|Ga0062590_101983013	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300004643\|Ga0062591_101458601	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300004643\|Ga0062591_101719673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300005289\|Ga0065704_10168013	All Organisms → cellular organisms → Bacteria → Acidobacteria	1309	Open in IMG/M
3300005290\|Ga0065712_10006471	All Organisms → cellular organisms → Bacteria	3439	Open in IMG/M
3300005290\|Ga0065712_10380290	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005293\|Ga0065715_10047434	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300005293\|Ga0065715_10180345	Not Available	1481	Open in IMG/M
3300005294\|Ga0065705_10014173	All Organisms → cellular organisms → Bacteria	2261	Open in IMG/M
3300005329\|Ga0070683_100997227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300005331\|Ga0070670_100000057	All Organisms → cellular organisms → Bacteria	118540	Open in IMG/M
3300005331\|Ga0070670_100343845	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300005331\|Ga0070670_101219703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300005334\|Ga0068869_100340842	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300005339\|Ga0070660_100383641	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300005345\|Ga0070692_10044668	All Organisms → cellular organisms → Bacteria	2283	Open in IMG/M
3300005354\|Ga0070675_100343447	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300005438\|Ga0070701_10581258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300005438\|Ga0070701_11401810	Not Available	502	Open in IMG/M
3300005440\|Ga0070705_100967621	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300005444\|Ga0070694_100163199	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300005444\|Ga0070694_100974423	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300005444\|Ga0070694_101612595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300005456\|Ga0070678_100244120	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300005535\|Ga0070684_101874749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300005539\|Ga0068853_100152373	All Organisms → cellular organisms → Bacteria → Acidobacteria	2081	Open in IMG/M
3300005546\|Ga0070696_100108636	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300005546\|Ga0070696_101787877	Not Available	531	Open in IMG/M
3300005549\|Ga0070704_101553553	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300005578\|Ga0068854_100585491	Not Available	950	Open in IMG/M
3300005578\|Ga0068854_100694675	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300005578\|Ga0068854_101189161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300005616\|Ga0068852_101997025	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300005617\|Ga0068859_101211458	Not Available	831	Open in IMG/M
3300005719\|Ga0068861_101527094	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300005842\|Ga0068858_100040885	All Organisms → cellular organisms → Bacteria	4300	Open in IMG/M
3300005937\|Ga0081455_10642673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300006049\|Ga0075417_10207242	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300006169\|Ga0082029_1177893	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	39166	Open in IMG/M
3300006169\|Ga0082029_1412675	All Organisms → cellular organisms → Bacteria	2269	Open in IMG/M
3300006169\|Ga0082029_1556654	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300006755\|Ga0079222_10894085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300006806\|Ga0079220_11195425	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300006844\|Ga0075428_102502068	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300006845\|Ga0075421_100133993	All Organisms → cellular organisms → Bacteria → Acidobacteria	3104	Open in IMG/M
3300006852\|Ga0075433_11911088	Not Available	509	Open in IMG/M
3300006894\|Ga0079215_10334250	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300006894\|Ga0079215_11426085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300006969\|Ga0075419_10028333	All Organisms → cellular organisms → Bacteria	3470	Open in IMG/M
3300007004\|Ga0079218_11451412	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300009093\|Ga0105240_10103038	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3468	Open in IMG/M
3300009101\|Ga0105247_10628364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	800	Open in IMG/M
3300009101\|Ga0105247_11183547	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	608	Open in IMG/M
3300009101\|Ga0105247_11599067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	535	Open in IMG/M
3300009148\|Ga0105243_10299207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1457	Open in IMG/M
3300009148\|Ga0105243_10972818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	849	Open in IMG/M
3300009148\|Ga0105243_11242900	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300009156\|Ga0111538_12780984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300009162\|Ga0075423_10227757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1953	Open in IMG/M
3300009176\|Ga0105242_12933085	Not Available	527	Open in IMG/M
3300009545\|Ga0105237_11139826	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	786	Open in IMG/M
3300009553\|Ga0105249_11610512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	722	Open in IMG/M
3300009789\|Ga0126307_10963720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	689	Open in IMG/M
3300010040\|Ga0126308_11212327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300010042\|Ga0126314_10120978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1800	Open in IMG/M
3300010045\|Ga0126311_10000003	All Organisms → cellular organisms → Bacteria	300912	Open in IMG/M
3300010045\|Ga0126311_10045532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2792	Open in IMG/M
3300010047\|Ga0126382_11612678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300010146\|Ga0126320_1053776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300010360\|Ga0126372_10702355	All Organisms → cellular organisms → Bacteria → Acidobacteria	988	Open in IMG/M
3300010396\|Ga0134126_10035301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	6316	Open in IMG/M
3300010396\|Ga0134126_11193581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	846	Open in IMG/M
3300010397\|Ga0134124_10838603	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300010397\|Ga0134124_12090064	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300010399\|Ga0134127_10021163	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	5048	Open in IMG/M
3300010399\|Ga0134127_10074850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2888	Open in IMG/M
3300010399\|Ga0134127_10354651	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1434	Open in IMG/M
3300010399\|Ga0134127_10636053	Not Available	1100	Open in IMG/M
3300010399\|Ga0134127_12952803	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300010400\|Ga0134122_10341591	All Organisms → cellular organisms → Bacteria → Acidobacteria	1300	Open in IMG/M
3300010400\|Ga0134122_11429311	Not Available	707	Open in IMG/M
3300010401\|Ga0134121_10002672	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	15248	Open in IMG/M
3300011119\|Ga0105246_12066577	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300012212\|Ga0150985_105871085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300012212\|Ga0150985_116516296	Not Available	972	Open in IMG/M
3300012212\|Ga0150985_120729995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300012469\|Ga0150984_109798286	Not Available	1064	Open in IMG/M
3300012469\|Ga0150984_112716899	Not Available	907	Open in IMG/M
3300012899\|Ga0157299_10197565	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300013307\|Ga0157372_10197759	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2328	Open in IMG/M
3300013308\|Ga0157375_11015221	Not Available	969	Open in IMG/M
3300013308\|Ga0157375_12461625	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	621	Open in IMG/M
3300013760\|Ga0120188_1007251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	925	Open in IMG/M
3300014325\|Ga0163163_11958941	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300014325\|Ga0163163_13056592	Not Available	522	Open in IMG/M
3300014745\|Ga0157377_10484889	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300015373\|Ga0132257_103747843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300018422\|Ga0190265_10659310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1167	Open in IMG/M
3300018466\|Ga0190268_11669285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300025315\|Ga0207697_10083377	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1349	Open in IMG/M
3300025321\|Ga0207656_10000688	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	11066	Open in IMG/M
3300025899\|Ga0207642_10171223	Not Available	1175	Open in IMG/M
3300025900\|Ga0207710_10002205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	9152	Open in IMG/M
3300025908\|Ga0207643_10022676	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3459	Open in IMG/M
3300025908\|Ga0207643_10056600	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2231	Open in IMG/M
3300025908\|Ga0207643_10165680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1331	Open in IMG/M
3300025911\|Ga0207654_10362083	All Organisms → cellular organisms → Bacteria → Acidobacteria	1001	Open in IMG/M
3300025911\|Ga0207654_10505565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	854	Open in IMG/M
3300025913\|Ga0207695_10107843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2770	Open in IMG/M
3300025924\|Ga0207694_10014714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	5899	Open in IMG/M
3300025925\|Ga0207650_10000027	All Organisms → cellular organisms → Bacteria	257466	Open in IMG/M
3300025925\|Ga0207650_10954938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	729	Open in IMG/M
3300025935\|Ga0207709_10192368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1450	Open in IMG/M
3300025935\|Ga0207709_11424040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300025942\|Ga0207689_10610739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	918	Open in IMG/M
3300025942\|Ga0207689_10867098	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300025942\|Ga0207689_11146996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300025981\|Ga0207640_10802916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300025981\|Ga0207640_11684605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300026023\|Ga0207677_12217262	Not Available	511	Open in IMG/M
3300026116\|Ga0207674_11083947	All Organisms → cellular organisms → Bacteria → Acidobacteria	770	Open in IMG/M
3300026142\|Ga0207698_12329491	Not Available	547	Open in IMG/M
3300027775\|Ga0209177_10039926	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1282	Open in IMG/M
3300027907\|Ga0207428_10148008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1789	Open in IMG/M
3300027909\|Ga0209382_10113679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3161	Open in IMG/M
3300028381\|Ga0268264_10047056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	3585	Open in IMG/M
3300028381\|Ga0268264_11142669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	788	Open in IMG/M
3300028381\|Ga0268264_12258498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300030619\|Ga0268386_10000134	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	42500	Open in IMG/M
3300031538\|Ga0310888_10697416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300031716\|Ga0310813_10725022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	890	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.86%
Environmental	Environmental	42.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.86%
Terrestrial	Environmental → Terrestrial	41.43%
Aquatic	Environmental → Aquatic	0.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.86%
Roots	Host-Associated → Plants → Roots	1.43%
Freshwater	Environmental → Aquatic → Freshwater	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.00%
Loam	Environmental → Terrestrial → Soil → Loam	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.43%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.43%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.71%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.71%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.14%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.43%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.71%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.71%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.14%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.43%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	2.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.14%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.14%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.43%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.43%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.43%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.43%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.43%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.71%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.71%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.71%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.71%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300000531	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB_Illumina_Assembled	Host-Associated	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013760	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0824.00001660	2162886006	Switchgrass Rhizosphere	RDSLMLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKAKSHRSS
CNBas_10061292	3300000531	Quercus Rhizosphere	MLWWVGSGLILAWIVLQLFAPRGWIPMLLLAGITVLIVQTAAYRKIKSLK*
JGI10214J12806_105116412	3300000891	Soil	MLWVIGAGLIIVWLVLTLFMPRGWVPLLLLSGITVLIIQIAAYRKTKYSNSVSRK*
JGI11615J12901_101875121	3300000953	Soil	MLWWVGSGLIVAWFILWLVKPVGWIPMLLISGICCLIIQIAAYRK
JGI10216J12902_1224705092	3300000956	Soil	MLWWLGSGLIVLWAVLRLVAPRGWIPTLLIAGISVLIIQIAAYRKTKAAHKGG*
JGI25406J46586_100054352	3300003203	Tabebuia Heterophylla Rhizosphere	MLWWVGVGLIVAWIILRLVAPMGWIPMLLLSGVCVLIIQIAAYRKTKSHR*
soilL2_100394216	3300003319	Sugarcane Root And Bulk Soil	MLWWVGAGLILAWVILRLVAPMGWIPMLLLSGICVLIIQIAAYRKTKSHR*
Ga0062593_1022076512	3300004114	Soil	MLWWVGSGLIFAWFVLWLVKPMGWIPMLLLTGIFILIVQIAAYRKTKSHR*
Ga0062593_1027369122	3300004114	Soil	LAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKAKSHRSS*
Ga0062590_1019830132	3300004157	Soil	GSGLILAWLILRFVKPAGWIPMLLLSGICCLIIQIAAYRKTRSHR*
Ga0062591_1014586011	3300004643	Soil	MLWWIGAGLIILWALLSLFAHRSWAPFLLLSGICVLIVQIAAYRKTHHR*
Ga0062591_1017196732	3300004643	Soil	MLWWVGSGLIFAWFVLWLVKPMGWIPMLLLTGIFILIVQITAYRKTKSHR*
Ga0065704_101680131	3300005289	Switchgrass Rhizosphere	AERDSLMLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKAKSHRSS*
Ga0065712_100064713	3300005290	Miscanthus Rhizosphere	MLWWVGAGLILAWIILRLVAPMGWIPMLLLSGVCVLIVQIAAYRKTKSHR*
Ga0065712_103802902	3300005290	Miscanthus Rhizosphere	MLWWVGTGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTKNHRSH*
Ga0065715_100474342	3300005293	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHRSS*
Ga0065715_101803452	3300005293	Miscanthus Rhizosphere	MLWWVGAGLILAWIILRLIAPMGWIPMLLLSGVCVLIIQIAAYRKTKSHR*
Ga0065705_100141732	3300005294	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRLVKPMGWIPMLLLSGICVLIIQIAAYRKTKSLR*
Ga0070683_1009972272	3300005329	Corn Rhizosphere	MLWWVGSGLILAWFVLRLVRPMGWIPMLLLSGIYCLIVQIAAYRKTKSHRSH*
Ga0070670_1000000577	3300005331	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGISVLIIQLAAYRKTKSVK*
Ga0070670_1003438452	3300005331	Switchgrass Rhizosphere	MLWWVGAGLILAWIILRLVAPMGWIPMLLLSGVCVLIIQIAAYRKTKSHR*
Ga0070670_1012197031	3300005331	Switchgrass Rhizosphere	MLWVVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR*
Ga0068869_1003408422	3300005334	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGISILIIQLAAYRKTKSVK*
Ga0070660_1003836412	3300005339	Corn Rhizosphere	MLWWLGIGLILAWFVLWLVKPMGWIPMLLLSGIFVLIIQIAAYRKTKSHR*
Ga0070692_100446682	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MLWVIGSGLIVSWIVLTLFAPRGWAPLLLLSGICVLVVQIAAYRKTKVHR*
Ga0070675_1003434472	3300005354	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKTKSHR*
Ga0070701_105812582	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLWVVGAGLIAAWGVLTLFAPKGWAPLLLLSGICCLIIQIAAYRKKKVHRYHR*
Ga0070701_114018101	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	GSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR*
Ga0070705_1009676211	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKTKRHR*
Ga0070694_1001631991	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MLWWVGAGLILLWGILTLFAPKGWAPLLLLSGICCLIIQIAAYRKTRYQRTASKD*
Ga0070694_1009744231	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	AERDSLMLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHRSS*
Ga0070694_1016125952	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MLWWVGSGLILAWLILRLVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR*
Ga0070678_1002441202	3300005456	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR*
Ga0070684_1018747491	3300005535	Corn Rhizosphere	MLWWVGSGLILAWLILRFVKPSGWIPMLLLSGICCLIIQVAAYR
Ga0068853_1001523732	3300005539	Corn Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGMCVLIIQTAAYRKRRATDKHG*
Ga0070696_1001086363	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTRIHR
Ga0070696_1017878772	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LMLWRIGAGLILGWAVLTLFVPKGWAPLLLLSGICCLIVHIAAYRKAKVHRYHR*
Ga0070704_1015535532	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGISVLIIQLAAYRKTKAVK*
Ga0068854_1005854912	3300005578	Corn Rhizosphere	MLWWVGAGLILAWGILSLFAPKGWAPLLLLSGICCLIIQIAAYRKTKYQRTASKD*
Ga0068854_1006946752	3300005578	Corn Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGVSVLIIQLAAYRKTKSVK*
Ga0068854_1011891611	3300005578	Corn Rhizosphere	MLWWVGTGLILAWFVLWLVKPMGWIPMLLLSGIFILIVQVAAYRKTKSHR*
Ga0068852_1019970251	3300005616	Corn Rhizosphere	SLMLWWLGIGLILAWFVLWLVKPMGWIPMLLLSGIFVLIIQIAAYRKTKSHR*
Ga0068859_1012114581	3300005617	Switchgrass Rhizosphere	MLWVVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIA
Ga0068861_1015270941	3300005719	Switchgrass Rhizosphere	ILAWIILRLVAPMGWIPMLLLSGVCVLIVQIAAYRKTKSHR*
Ga0068858_1000408853	3300005842	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTRIHRLRR*
Ga0081455_106426731	3300005937	Tabebuia Heterophylla Rhizosphere	MLWVIGAGLIFGWIILTLFAPRGWAPLLLLSGICVLIVQIAAYRRTRYARSKLHE
Ga0075417_102072422	3300006049	Populus Rhizosphere	MLWWIGAGLILGWGVLTLFAPKGWAPLLLLSGICCLIIQIAAYRKTKSTGFHK*
Ga0082029_117789313	3300006169	Termite Nest	MLWMIGAGLILLWGILTLFAPKGWAPLLLLSGICCLIIQIAAYRKTKVHRYHR*
Ga0082029_14126752	3300006169	Termite Nest	MLWVIGAGLIVSWIVLTLFAPRGWAPLLLLSGICVLIVQIAAYRKTKVHR*
Ga0082029_15566542	3300006169	Termite Nest	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGISILIIQLAAYRKAKSVK*
Ga0079222_108940852	3300006755	Agricultural Soil	MLWLVGSGLILAWFILWLVKPSGWIPMLLLSGLFILIIQIAAYRKTKSHR*
Ga0079220_111954251	3300006806	Agricultural Soil	LWLVKPSGWIPMLLLSGLFILIIQIAAYRKTKSHR*
Ga0075428_1025020681	3300006844	Populus Rhizosphere	MLWAIGAGLILLWGILTLFAPKGWAPLLLLSGICVLIIQIAAYRKTKYQGTASKD*
Ga0075421_1001339932	3300006845	Populus Rhizosphere	MLWVVGAGLILGWGILSLFAPRAWSPLLLLSGITVLIIQIAAYRKTRMHRSVD*
Ga0075433_119110881	3300006852	Populus Rhizosphere	RLQAERDSLMLWWVGTGLILAWFVLWLVKPMGWIPMLLLSGIFILIVQVAAYRKTKSHR*
Ga0079215_103342502	3300006894	Agricultural Soil	MLWVVGAGLILLWLILTLFMPRGWVPLLLLSGICVLIVQIAAYRKTKSTRRRGDTVTR*
Ga0079215_114260851	3300006894	Agricultural Soil	MLWWIGAGLIVLWAILSLFAYRGWVPLLLLSGICVLIVQTAAYRKTKTHR*
Ga0075419_100283333	3300006969	Populus Rhizosphere	MLWVIGAGLILGWVILSLFAPRAWSPLLLLSGICVLIVQIAAYRKTRVHR*
Ga0079218_114514122	3300007004	Agricultural Soil	MLWVIGAGLIILWLVLTLFMPRGWVPLLLLSGITVLIIQIAAYRKTKSTRGHGDAETR*
Ga0105240_101030382	3300009093	Corn Rhizosphere	MLWWIGAGLILGWGVLTLFAHKGWAPLLLLSGICCLIIQIAAYRKTKYQRIASKE*
Ga0105247_106283642	3300009101	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQLAAHRKTKSVK*
Ga0105247_111835472	3300009101	Switchgrass Rhizosphere	MLWWLGSGLILAWFVLWLVRPMGWIPMLLLSGIYCLIVQIAAYRKTKSHRSH*
Ga0105247_115990672	3300009101	Switchgrass Rhizosphere	MLWWVGAGLILAWIILRLVAPMGWIPMLLLSGVCVLIVQIAAYRKTKASLRNDN*
Ga0105243_102992072	3300009148	Miscanthus Rhizosphere	MLWWVGTGLILAWFVLWLVRPMGWIPMLLLSGIFILIVQIAAYRKTKSHR*
Ga0105243_109728182	3300009148	Miscanthus Rhizosphere	MLWWVGAGLIVAWIILRLVAPMGWIPMLLLSGVCVLIIQIAAYRKTKSHR*
Ga0105243_112429002	3300009148	Miscanthus Rhizosphere	GSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKRRATDKHG*
Ga0111538_127809841	3300009156	Populus Rhizosphere	MLWWVGTGLILAWFVLWLVKPMGWIPMLLLSGIFILIVQVAA
Ga0075423_102277572	3300009162	Populus Rhizosphere	MLWWVGTGLILGWIILTLFSPRGWAPLLLLSGICCFIIQIAAYRKTKIHKSQR*
Ga0105242_129330852	3300009176	Miscanthus Rhizosphere	MLWWLGTGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTKNHRSH*
Ga0105237_111398262	3300009545	Corn Rhizosphere	MLWWVGTGLIFAWFVLWLVRPMGWIPTLLLSGICCLIIQIAAYRKTKSHR*
Ga0105249_116105122	3300009553	Switchgrass Rhizosphere	MLWWLGTGLIFAWFVLWLVRPMGWIPTLLLSGICCLIIQIAAYRKTKSHR*
Ga0126307_109637202	3300009789	Serpentine Soil	MLWWVGTGLILAWVILRLVKPSGWIPILLLSGIYCLIIQIAAYRKTKSHR*
Ga0126308_112123271	3300010040	Serpentine Soil	MLWWIGAGLIVLWAILSLFAYRGWVPLLLLSGICVLIVQTAAYRKTKSHR*
Ga0126314_101209782	3300010042	Serpentine Soil	MLWWVGSGLILAWVILRLVKPSGWIPMLLLAGICCLIIQIAAYRKTKSHR*
Ga0126311_10000003251	3300010045	Serpentine Soil	MLWWVGSGLILAWLILRFVKPMGWIPILLLSGICVLIIQIAAYRKTKSHR*
Ga0126311_100455323	3300010045	Serpentine Soil	MHWWVGIGLILAWVILRLVAPSGWIPMLLLAGICVLIIQVAAYRKTKSHRSP*
Ga0126382_116126782	3300010047	Tropical Forest Soil	VGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTRIHRFHRLSVAFSLAVGS
Ga0126320_10537762	3300010146	Soil	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKRRATDKH
Ga0126372_107023551	3300010360	Tropical Forest Soil	RDSLMLWWVGTGLILAWAVLRLVKPMGWIPMLLISGICVLIIQTAAYRKTKNHRSH*
Ga0134126_100353013	3300010396	Terrestrial Soil	MLWWVGSGLIVAWFILWLVKPSGWIPMLLLSGICCLIIQIAAYRKTKSHR*
Ga0134126_111935812	3300010396	Terrestrial Soil	MLWWVGSGLILAWFILWLVKPSGWIPMLLLSGICCLIIQIAAYRRTKSHR*
Ga0134124_108386031	3300010397	Terrestrial Soil	GSGLILAWLILRFGKPAGWIPMLLLSGICCLIIQIAAYRKTRSHR*
Ga0134124_120900642	3300010397	Terrestrial Soil	GSGLILAWFVLRLVRPMGWIPMLLLSGIYCLIVQIAAYRKTKSHRSH*
Ga0134127_100211633	3300010399	Terrestrial Soil	MLWWVGTGLIVAWIILELFAPRGWIHLLLLSGLCCLIVQIAAYRKIKSLKSRR*
Ga0134127_100748502	3300010399	Terrestrial Soil	MLWWVGSGLILAWLILRFVKPAGWIPMLLLSGICCLIIQIAAYRKTRSHR*
Ga0134127_103546513	3300010399	Terrestrial Soil	MLWWVGAGLILAWGILSLFAPKGWAPLLLLSGICCLIIQIAAYRKTKYQRATSKD*
Ga0134127_106360531	3300010399	Terrestrial Soil	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLI
Ga0134127_129528032	3300010399	Terrestrial Soil	GSGLILAWLILRFVKPMGWIPMLLISGISILIIQLAAYRKTKSVK*
Ga0134122_103415911	3300010400	Terrestrial Soil	QRDSVMLWVVGAGLIAAWGVLTLFAPKGWAPLLLLSGICCLIIQIAAYRKKKVHRYHR*
Ga0134122_114293112	3300010400	Terrestrial Soil	MLWVIGAGLIVLWAILSLFAPRGWAPLLLLSGICVLIVQIAAYR
Ga0134121_100026722	3300010401	Terrestrial Soil	MLWWVGSGLILAWLILRLVKPMGWIPMLLLSGVCVLIIQLAAYRKTKSVK*
Ga0105246_120665771	3300011119	Miscanthus Rhizosphere	GLILAWFVLWLVRPMGWIPTLLLSGICCLIIQIAAYRKTKSHR*
Ga0150985_1058710852	3300012212	Avena Fatua Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKRRA
Ga0150985_1165162961	3300012212	Avena Fatua Rhizosphere	MLWWVGTGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTK
Ga0150985_1207299952	3300012212	Avena Fatua Rhizosphere	MLWWLGIGLILSWFVLWLVKPMGWIPMLLLSGIFVLIVQIAAYRKTKSHR*
Ga0150984_1097982862	3300012469	Avena Fatua Rhizosphere	MLWWVGTGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTKSHR*
Ga0150984_1127168992	3300012469	Avena Fatua Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQLAAYRKTKSVK*
Ga0157299_101975651	3300012899	Soil	WLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKIHR*
Ga0157372_101977591	3300013307	Corn Rhizosphere	MLWWIGAGLILGWGVLTLFTHKGWAPLLLLSGICCLIIQIAAYRKTKYQRIASKE*
Ga0157375_110152212	3300013308	Miscanthus Rhizosphere	MLWWVGAGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTKNH
Ga0157375_124616252	3300013308	Miscanthus Rhizosphere	MLWVVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKTKRHR*
Ga0120188_10072512	3300013760	Terrestrial	MLWVIGAGLIFLWLVLTLFMPRGWVPLLLLSGICVLIVQIAAYRKTKVHR*
Ga0163163_119589412	3300014325	Switchgrass Rhizosphere	GLILAWFVLRLVRPMGWIPMLLLSGIYCLIVQIAAYRKTKSHRSH*
Ga0163163_130565922	3300014325	Switchgrass Rhizosphere	WVVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKTKSHR*
Ga0157377_104848891	3300014745	Miscanthus Rhizosphere	SLMLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKARNHRFRR*
Ga0132257_1037478432	3300015373	Arabidopsis Rhizosphere	MLWWVGSGLILAWFILCFVKPMGWIPMLLLSGICCLIIQIAAYRRTKSHR*
Ga0190265_106593102	3300018422	Soil	MLWVVGAGLILLWLILTLFMPRGWVPLLLLSGICVLIVQIAAYRKTKSHT
Ga0190268_116692852	3300018466	Soil	MLWWVGIGLILAWVILRLVAPSGWIPMLLLAGICVLIIQIA
Ga0207697_100833772	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGISILIIQLAAYRKTKSVK
Ga0207656_100006883	3300025321	Corn Rhizosphere	MLWVVGAGLIAAWGVLTLFAPKGWAPLLLLSGICCLIIQIAAYRKKKVHRYHR
Ga0207642_101712231	3300025899	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRK
Ga0207710_100022054	3300025900	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRLVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR
Ga0207643_100226763	3300025908	Miscanthus Rhizosphere	MLWVIGSGLIVSWIVLTLFAPRGWAPLLLLSGICVLVVQIAAYRKTKVHR
Ga0207643_100566003	3300025908	Miscanthus Rhizosphere	MLWWVGAGLILAWIILRLIAPMGWIPMLLLSGVCVLIIQIAAYRKTKSHR
Ga0207643_101656802	3300025908	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR
Ga0207654_103620832	3300025911	Corn Rhizosphere	LQAERDSLMLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHRSS
Ga0207654_105055652	3300025911	Corn Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGVSVLIIQLAAYRKTKSVK
Ga0207695_101078432	3300025913	Corn Rhizosphere	MLWWIGAGLILGWGVLTLFAHKGWAPLLLLSGICCLIIQIAAYRKTKYQRIASKE
Ga0207694_100147145	3300025924	Corn Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLVIQTAAYRKTRIHR
Ga0207650_10000027102	3300025925	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLISGISVLIIQLAAYRKTKSVK
Ga0207650_109549382	3300025925	Switchgrass Rhizosphere	MLWWVGSGLILAWFVLRLVRPMGWIPMLLLSGIYCLIVQIAAYRKTKSHRSH
Ga0207709_101923682	3300025935	Miscanthus Rhizosphere	MLWWVGTGLILAWFVLWLVRPMGWIPMLLLSGIFILIVQIAAYRKTKSHR
Ga0207709_114240402	3300025935	Miscanthus Rhizosphere	MLWWVGAGLILAWIILRLVAPMGWIPMLLLSGVCVLIIQIAAYRKTKSHR
Ga0207689_106107392	3300025942	Miscanthus Rhizosphere	MLWWVGAGLILAWIILRLVAPMGWIPMLLLSGVCVLIIQIAAYRKTKASLRNDN
Ga0207689_108670982	3300025942	Miscanthus Rhizosphere	GLILAWLILRFVKPMGWIPMLLISGISILIIQLAAYRKTKSVK
Ga0207689_111469961	3300025942	Miscanthus Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTA
Ga0207640_108029162	3300025981	Corn Rhizosphere	MLWWVGAGLILAWGILSLFAPKGWAPLLLLSGICCLIIQIAAYRKTKYQRTASKD
Ga0207640_116846051	3300025981	Corn Rhizosphere	MLWWVGTGLILAWFVLWLVKPMGWIPMLLLSGIFILIVQVAAYRKTKSHR
Ga0207677_122172621	3300026023	Miscanthus Rhizosphere	LQAERDSLMLWWVGTGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTKNHRSH
Ga0207674_110839472	3300026116	Corn Rhizosphere	LRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHR
Ga0207698_123294912	3300026142	Corn Rhizosphere	AERDSLMLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKTKSHR
Ga0209177_100399262	3300027775	Agricultural Soil	MLWLVGSGLILAWFILWLVKPSGWIPMLLLSGLFILIIQIAAYRKTKSHR
Ga0207428_101480081	3300027907	Populus Rhizosphere	MLWWIGAGLILGWGVLTLFAPKGWAPLLLLSGICCLIIQIAAYRKTKSTGFHK
Ga0209382_101136793	3300027909	Populus Rhizosphere	MLWVVGAGLILGWGILSLFAPRAWSPLLLLSGITVLIIQIAAYRKTRMHRSVD
Ga0268264_100470564	3300028381	Switchgrass Rhizosphere	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQIAAYRKTKSHRSS
Ga0268264_111426692	3300028381	Switchgrass Rhizosphere	MLWWVGTGLILAWAVLRLVKPMGWIPMLLLSGICCLIIQIAAYRKTKNHRSH
Ga0268264_122584981	3300028381	Switchgrass Rhizosphere	MLWWVGIGLILAWFVLWLVKPMGWIPMLLLAGICVLIIQIAAYRKTKSHR
Ga0268386_1000013419	3300030619	Soil	MLWWIGAGLIILWAVLALFAYRGWVPLLLLSGICVLIVQIAAYRKTNRARAASGDWQ
Ga0310888_106974161	3300031538	Soil	MLWWVGSGLILAWLILRFVKPMGWIPMLLLSGICVLIIQTAAYRKTKSHR
Ga0310813_107250222	3300031716	Soil	MLWWVGTGLILAWVIMRVVAPRGWIPVLLLSGICVLIIQVAAYRKTKSHRSPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054335

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences