Scaffold Ga0126310_10418374

Overview

Basic Information

• Taxon OID: 3300010044
• Scaffold ID: Ga0126310_10418374
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 959
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8711
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035953	Metagenome	171	Y
F059326	Metagenome	134	Y
F103531	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126310_104183742	F103531	N/A	MRISMKKIFCAIVMMAVAWTTVVHAKDDDFNSVVKMIEQFYRVKHQGVPFLAKAGMKVATTAARIKGGQAKQIAEAGSIKLAVFEEQDFDGDFMKFRASLTVH*
Ga0126310_104183743	F059326	GAG	VLVITIADRDATVVQVTLSPKNLAILMRDPEGTGKSITEEATIIDQE*
Ga0126310_104183744	F035953	N/A	LNFLLLVVLATPASFAIKAQEVEDTIKIKTRVVFLDALVKDKKTSLPISNLTPENFEVLDDGKPRSLSYFTREGQARKPLALILILDLREDGAGRFLKR