Scaffold Ga0126380_10748347

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10748347
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 792
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001070	Metagenome / Metatranscriptome	787	Y
F004510	Metagenome / Metatranscriptome	435	Y
F012740	Metagenome / Metatranscriptome	277	Y
F076826	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_107483471	F012740	N/A	TRTIMRRIANDYDRLAKVAEEQLADKERGAIGDKT*
Ga0126380_107483472	F004510	GGAGG	MITWAPIGSAVIALVPVVLVQGKWTTSQDSWFAAVFTSAIMAMVIDHFVNYINQ*
Ga0126380_107483473	F001070	AGG	MEAGQMNSFDKMLGWFPHNATEWIEFIIVALLLWLLMVVAISELELTSVS*
Ga0126380_107483474	F076826	N/A	MEVDMWGAENEEPEMSFRHGYQQGAIEVFCAIEQFLDPATREVLQAWIEKDVSMWRAKAMLG