Scaffold Ga0126380_10010486

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10010486
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4140
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F000788	Metagenome / Metatranscriptome	891	Y
F063898	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_100104861	F063898	N/A	PAPMMALTGMDKLLFWLGLGAAQKGAGSKEVKPSRHWVVSFVVGI*
Ga0126380_100104862	F000788	GGA	MKPRTVYDKAVQDFTETAQQLARLNQHFRQASFAEFEMLMGLDDEVLKRYGLPKPAVKRALLEVYQTVVLDQQR*
Ga0126380_100104864	F000461	GGCGG	MDNLLFWLGIGAAQRGAGSKPNKRRPWVVSLLFGVLVAVLIGVGMFFLLVSQKL*