Scaffold Ga0126309_10005874

Overview

Basic Information

• Taxon OID: 3300010039
• Scaffold ID: Ga0126309_10005874
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4782
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8707
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037654	Metagenome	167	Y
F070770	Metagenome	122	N
F104098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126309_100058743	F070770	AGGA	MAKKRAGEQSAPEAWIGRDVVIGVGASGARVSGELREASDRGVVLHYGAEHGGRDPGHVFYPWSNVQAIQLPDEEQTADEEQAG*
Ga0126309_100058744	F104098	GGAGG	MQKIRWYNPTTREEEEVPAPMSDAQAIELLSGDPDSDRFIEEYRRLSAAHPDTVDALTLTGETFYWEHRQGQPPG*
Ga0126309_100058748	F037654	GGAG	MAASEFQRRLMNHLNRQGISLANLAERTGYDALLLENLIAGKTRQIPVDFFVRVADALDLTMGEKDALVRSWAFGIEKRSWRLTSV*