Scaffold Ga0126309_10005578

Overview

Basic Information

• Taxon OID: 3300010039
• Scaffold ID: Ga0126309_10005578
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4882
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8707
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017758	Metagenome / Metatranscriptome	239	Y
F030362	Metagenome	185	Y
F100608	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126309_100055781	F100608	N/A	LLHRHRRDAFPSTGCPHLAQTVVSVIGDDGRRRRLRLPGRGRRSPT*
Ga0126309_100055784	F017758	GGCGG	MGVLVILEMDGSTDTLLAAGADLEARRPTSAMLARVVAPTESGVVVATFWESAEARDAYQSQPEHREALQASGLLDAVTEMRSRVFGDAELKLT*
Ga0126309_100055788	F030362	AGGAG	MTFLVVGLDRRTLAPWHRNILEHDVASAARAAVARAVADGIDLAVAAVIGPSSSILDGHARP*