Metagenome / Metatranscriptome Family F100608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100608
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	46 residues
Representative Sequence	LVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA
Number of Associated Samples	70
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.14 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.137 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (31.372 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.078 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.00% β-sheet: 0.00% Coil/Unstructured: 96.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03779	SPW	2.94
PF00211	Guanylate_cyc	2.94
PF13460	NAD_binding_10	2.94
PF00484	Pro_CA	2.94
PF01872	RibD_C	2.94
PF07883	Cupin_2	2.94
PF00903	Glyoxalase	2.94
PF06772	LtrA	1.96
PF04545	Sigma70_r4	1.96
PF00291	PALP	1.96
PF13649	Methyltransf_25	1.96
PF03706	LPG_synthase_TM	1.96
PF08240	ADH_N	1.96
PF00440	TetR_N	1.96
PF01551	Peptidase_M23	0.98
PF12857	TOBE_3	0.98
PF13463	HTH_27	0.98
PF00532	Peripla_BP_1	0.98
PF12681	Glyoxalase_2	0.98
PF12697	Abhydrolase_6	0.98
PF07690	MFS_1	0.98
PF03537	Glyco_hydro_114	0.98
PF13669	Glyoxalase_4	0.98
PF06803	DUF1232	0.98
PF00312	Ribosomal_S15	0.98
PF03061	4HBT	0.98
PF00717	Peptidase_S24	0.98
PF00528	BPD_transp_1	0.98
PF08327	AHSA1	0.98
PF11253	DUF3052	0.98
PF00583	Acetyltransf_1	0.98
PF12344	UvrB	0.98
PF14572	Pribosyl_synth	0.98
PF06224	HTH_42	0.98
PF03309	Pan_kinase	0.98
PF13418	Kelch_4	0.98
PF13527	Acetyltransf_9	0.98
PF03950	tRNA-synt_1c_C	0.98
PF02604	PhdYeFM_antitox	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.94
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	2.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.94
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	1.96
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	1.96
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	0.98
COG1521	Pantothenate kinase type III	Coenzyme transport and metabolism [H]	0.98
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.98
COG2342	Endo alpha-1,4 polygalactosaminidase, GH114 family (was erroneously annotated as Cys-tRNA synthetase)	Carbohydrate transport and metabolism [G]	0.98
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.98
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.98
COG3868	Alpha-1,4 polygalactosaminidase, glycosyl hydrolase family GH114	Carbohydrate transport and metabolism [G]	0.98
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.14 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.14 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.14 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.37 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76.47 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	50.00 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6.86 %
Unclassified	root	N/A	6.86 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.98 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	41.18 %
Unclassified	root	N/A	6.86 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.92 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.96 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.98 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.98 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	41.18 %
Unclassified	root	N/A	6.86 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.96 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.96 %
Baekduiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae	0.98 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.98 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	41.18 %
Unclassified	root	N/A	6.86 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.96 %
Baekduia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia	0.98 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.98 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.98 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	0.98 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	41.18 %
Unclassified	root	N/A	6.86 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.96 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.98 %
Baekduia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	0.98 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.98 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.98 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119588667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300002568\|C688J35102_120968987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3625	Open in IMG/M
3300004463\|Ga0063356_104309951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	612	Open in IMG/M
3300005181\|Ga0066678_10368126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	950	Open in IMG/M
3300005294\|Ga0065705_10227344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1289	Open in IMG/M
3300005546\|Ga0070696_102008699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300005615\|Ga0070702_100602143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	824	Open in IMG/M
3300005719\|Ga0068861_102162838	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005840\|Ga0068870_10094880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1675	Open in IMG/M
3300006844\|Ga0075428_101883112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	622	Open in IMG/M
3300006845\|Ga0075421_102408116	Not Available	551	Open in IMG/M
3300006852\|Ga0075433_10790213	All Organisms → cellular organisms → Bacteria → Terrabacteria group	829	Open in IMG/M
3300006854\|Ga0075425_101357594	All Organisms → cellular organisms → Bacteria → Terrabacteria group	805	Open in IMG/M
3300006894\|Ga0079215_11472867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	535	Open in IMG/M
3300009094\|Ga0111539_11947820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	681	Open in IMG/M
3300009094\|Ga0111539_13281787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300009100\|Ga0075418_11025698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	893	Open in IMG/M
3300009148\|Ga0105243_10180115	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300009153\|Ga0105094_10672510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	606	Open in IMG/M
3300009157\|Ga0105092_10254086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	988	Open in IMG/M
3300009176\|Ga0105242_10811642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	927	Open in IMG/M
3300009545\|Ga0105237_12684884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300009553\|Ga0105249_13038559	All Organisms → cellular organisms → Bacteria → Terrabacteria group	539	Open in IMG/M
3300009553\|Ga0105249_13535978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300009610\|Ga0105340_1347142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	656	Open in IMG/M
3300009789\|Ga0126307_11413978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300009789\|Ga0126307_11491891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300009840\|Ga0126313_10304913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1246	Open in IMG/M
3300009840\|Ga0126313_11295034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300009840\|Ga0126313_11441378	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300010036\|Ga0126305_10311764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	1023	Open in IMG/M
3300010036\|Ga0126305_10343735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	976	Open in IMG/M
3300010036\|Ga0126305_10378757	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300010036\|Ga0126305_11183932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300010036\|Ga0126305_11185450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300010037\|Ga0126304_10028146	All Organisms → cellular organisms → Bacteria	3279	Open in IMG/M
3300010037\|Ga0126304_10102860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1808	Open in IMG/M
3300010037\|Ga0126304_10329536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1014	Open in IMG/M
3300010037\|Ga0126304_10534949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	788	Open in IMG/M
3300010037\|Ga0126304_10895139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	603	Open in IMG/M
3300010037\|Ga0126304_11241049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300010038\|Ga0126315_10089324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1749	Open in IMG/M
3300010039\|Ga0126309_10005578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	4882	Open in IMG/M
3300010039\|Ga0126309_10756898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300010040\|Ga0126308_10730606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	682	Open in IMG/M
3300010040\|Ga0126308_10743866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	676	Open in IMG/M
3300010040\|Ga0126308_11025923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300010041\|Ga0126312_10226314	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300010041\|Ga0126312_10287477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1158	Open in IMG/M
3300010041\|Ga0126312_11408447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300010042\|Ga0126314_10286718	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300010042\|Ga0126314_10902033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300010042\|Ga0126314_11136561	Not Available	582	Open in IMG/M
3300010045\|Ga0126311_10551472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	908	Open in IMG/M
3300010145\|Ga0126321_1021883	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300010166\|Ga0126306_10072603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2436	Open in IMG/M
3300010166\|Ga0126306_10973868	Not Available	690	Open in IMG/M
3300010166\|Ga0126306_11752946	Not Available	519	Open in IMG/M
3300010396\|Ga0134126_10965911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	955	Open in IMG/M
3300012502\|Ga0157347_1069870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300012902\|Ga0157291_10073387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300012905\|Ga0157296_10200220	Not Available	637	Open in IMG/M
3300012986\|Ga0164304_10474010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	908	Open in IMG/M
3300014265\|Ga0075314_1162802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300014969\|Ga0157376_10261318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1622	Open in IMG/M
3300014969\|Ga0157376_11922419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	629	Open in IMG/M
3300015258\|Ga0180093_1165956	Not Available	561	Open in IMG/M
3300015372\|Ga0132256_100602907	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1213	Open in IMG/M
3300017792\|Ga0163161_10256205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1365	Open in IMG/M
3300018422\|Ga0190265_10096079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2762	Open in IMG/M
3300018422\|Ga0190265_10107255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2635	Open in IMG/M
3300018422\|Ga0190265_11978270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300018465\|Ga0190269_11812667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300018469\|Ga0190270_10522794	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300018469\|Ga0190270_11676152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300018469\|Ga0190270_12057207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300018469\|Ga0190270_13291105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300018481\|Ga0190271_11737917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	737	Open in IMG/M
3300018481\|Ga0190271_12416818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	629	Open in IMG/M
3300018481\|Ga0190271_13238636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300019356\|Ga0173481_10067499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1283	Open in IMG/M
3300019377\|Ga0190264_10176605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1142	Open in IMG/M
3300023102\|Ga0247754_1026549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1288	Open in IMG/M
3300025908\|Ga0207643_10814904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300025918\|Ga0207662_10238902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1189	Open in IMG/M
3300025920\|Ga0207649_11409383	All Organisms → cellular organisms → Bacteria → Terrabacteria group	551	Open in IMG/M
3300025928\|Ga0207700_10294258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1400	Open in IMG/M
3300025935\|Ga0207709_10112980	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300026067\|Ga0207678_10135659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2100	Open in IMG/M
3300026075\|Ga0207708_10452400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1070	Open in IMG/M
3300028592\|Ga0247822_10400175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1070	Open in IMG/M
3300028875\|Ga0307289_10307270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	652	Open in IMG/M
3300028884\|Ga0307308_10473801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300030336\|Ga0247826_10461109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	952	Open in IMG/M
3300031229\|Ga0299913_11496755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300031548\|Ga0307408_100327801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1292	Open in IMG/M
3300031740\|Ga0307468_101073956	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300031847\|Ga0310907_10803110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300031901\|Ga0307406_10302639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1229	Open in IMG/M
3300032002\|Ga0307416_100229690	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300032013\|Ga0310906_10075583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1765	Open in IMG/M
3300032075\|Ga0310890_11295561	Not Available	596	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.53%
Host-Associated	Host-Associated	26.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.63%
Plants	Host-Associated → Plants	26.47%
Aquatic	Environmental → Aquatic	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Sediment	Environmental → Aquatic → Sediment	1.96%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.65%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	31.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1195886671	3300002568	Soil	HRRDAFPSTGCPHLAQTVVSVIGDGGRGPRLRLPGRGRRSPA*
C688J35102_1209689878	3300002568	Soil	SGDAPAGDLFLMLHRHRRDGFPSTGCPHLAQTIVSVIGERGRRRRLRVPGL*
Ga0063356_1043099511	3300004463	Arabidopsis Thaliana Rhizosphere	GDLFLVLHRHRRDAFPRVGCPHLAQTVVSVVGDGGRKRFGLR*
Ga0066678_103681263	3300005181	Soil	VTVAFLILHRHRRDAFPSTGCPHLAQTVVSVIGDGGRSRRLRLPGREGRSPAER*
Ga0065705_102273443	3300005294	Switchgrass Rhizosphere	DLFLVLHRHRRDAFPSTGCPHLGQTVVSVIGDGGRRRRLRLGRSAGNPDRLPTPE*
Ga0070696_1020086992	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LFLVLHRHRRDAFPTIGCPHLSQTVVSVIGDGGRRRLGLPGRGSRSPT*
Ga0070702_1006021431	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0068861_1021628381	3300005719	Switchgrass Rhizosphere	YEDAPAGDLFLLLHRHRRDAFPRIGCPHLAQTVVSVIGDGGRRRRLRLPGRRSRSRA*
Ga0068870_100948804	3300005840	Miscanthus Rhizosphere	GDLFLLLHRHRRDAFPSTGCPHLGQTVVSVIGDGGRRRRLRLGRSGRNPEPAPE*
Ga0075428_1018831121	3300006844	Populus Rhizosphere	IGCPHLAQTVVSVIGDGMRRGRLRLRGRGRRSPA*
Ga0075421_1024081161	3300006845	Populus Rhizosphere	DAPPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGERRRRLRLPGRGGGSPASE*
Ga0075433_107902132	3300006852	Populus Rhizosphere	LVLHRHRRDAFPSTGCPHLAQTVVSVIAVGARRHRLRWPGRAGRDHLLRE*
Ga0075425_1013575941	3300006854	Populus Rhizosphere	HRHRRDAFPSTGCPHLAQTVVSVIGVGARRHRLRWPGRAGRDHLLRE*
Ga0079215_114728672	3300006894	Agricultural Soil	PSTGCVHLAQTVVSVIGDGGRRGRLRLPGRGRPS*
Ga0111539_119478203	3300009094	Populus Rhizosphere	RDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGGG*
Ga0111539_132817872	3300009094	Populus Rhizosphere	YRDAAPGDLFLILHRHRRDAFPSTGCPHLAQTVVSVIGDDEPRRRLRLPGRRP*
Ga0075418_110256981	3300009100	Populus Rhizosphere	STGCPHLAQTVVSVIGDSARRRRLRLPGRGGRSPA*
Ga0105243_101801151	3300009148	Miscanthus Rhizosphere	FPSIGCPHLAQTVVSVIGDSVQRRLRLPGRGRLTA*
Ga0105094_106725102	3300009153	Freshwater Sediment	AFPSTGCPHLAQTVVSVVADGLQRRRLRMPGRGSRSPA*
Ga0105092_102540861	3300009157	Freshwater Sediment	VLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGGRSPA*
Ga0105242_108116422	3300009176	Miscanthus Rhizosphere	DLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGNGERRRPLRLPRRGRRSPAEP*
Ga0105237_126848842	3300009545	Corn Rhizosphere	LYRDAPPGDLFLILHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0105249_130385592	3300009553	Switchgrass Rhizosphere	LHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGGRSPS*
Ga0105249_135359782	3300009553	Switchgrass Rhizosphere	VLHRHRRDAYPSTGCPHLAQTVVSVIGDGGRRRLLRLPGRGSRAGA*
Ga0105340_13471421	3300009610	Soil	RHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGGGRRSPAWP*
Ga0126307_114139781	3300009789	Serpentine Soil	HRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0126307_114918911	3300009789	Serpentine Soil	HRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRPPA*
Ga0126313_103049133	3300009840	Serpentine Soil	STGCPHLAQTVVSVIGDGGRRGWLRLPGRGDRSLAKR*
Ga0126313_112950342	3300009840	Serpentine Soil	DAFPSTGCPHLAQTVVSVIGDAGRRRRLRLPGRGRRSPA*
Ga0126313_114413782	3300009840	Serpentine Soil	TGCPHLAQTVVSVIGDGGRSRRLRLPGRGSRSAA*
Ga0126305_103117641	3300010036	Serpentine Soil	LFLVLHRHRRDAFPSTGCPHLAQTVVSVVGDGGRRRRLRLPSRGGRSPA*
Ga0126305_103437353	3300010036	Serpentine Soil	GDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDDGRRRRLRLPGRGRRPPA*
Ga0126305_103787572	3300010036	Serpentine Soil	DAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0126305_111839322	3300010036	Serpentine Soil	PAGDLFLVLQRHRRDAFPSTGCPHLAQTVVSVIGDNARRRRLRLPGRRDGSTA*
Ga0126305_111854503	3300010036	Serpentine Soil	PSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0126304_100281465	3300010037	Serpentine Soil	VLHRHRRDAFPSTGCPHLAQTVVSVIGDDGRRRRLRLPGRRRRSTA*
Ga0126304_101028603	3300010037	Serpentine Soil	LHRHRRDAFPSTGCPHLAQTVVSVIGDDGRRRRLRLPGRGRRPPA*
Ga0126304_103295362	3300010037	Serpentine Soil	DLFLVLHRHRRDAFPSTGCPHLAQTVVSVVGDGGRRRRLRLPSRGGRSPA*
Ga0126304_105349492	3300010037	Serpentine Soil	DAFPSTGCPHLAQTVVSVIGDDGRRRRLRLPGRGRRSPA*
Ga0126304_108951393	3300010037	Serpentine Soil	LVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0126304_112410491	3300010037	Serpentine Soil	LVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRPPA*
Ga0126315_100893245	3300010038	Serpentine Soil	DLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRR*
Ga0126309_100055781	3300010039	Serpentine Soil	LLHRHRRDAFPSTGCPHLAQTVVSVIGDDGRRRRLRLPGRGRRSPT*
Ga0126309_107568981	3300010039	Serpentine Soil	PGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLPFLGRRRSTA*
Ga0126308_107306061	3300010040	Serpentine Soil	YRDAPPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGARRRRLRLPGRGGRSPA*
Ga0126308_107438662	3300010040	Serpentine Soil	FLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRASRSPAQP*
Ga0126308_110259231	3300010040	Serpentine Soil	DAFPSTGCPHLAQTVVSVIGDGGRRGWLRLPGRGDRSLAKR*
Ga0126312_102263143	3300010041	Serpentine Soil	FPSTGCPHLAQTVVSVIGDGGRRRRPRLPGRGRGSQA*
Ga0126312_102874773	3300010041	Serpentine Soil	FLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0126312_114084472	3300010041	Serpentine Soil	DLFLVLHRNRRDAFPRIGCPHLAQTVVSVIGDGMRRRRLRLPGRLRRSSAEAQS*
Ga0126314_102867183	3300010042	Serpentine Soil	FLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGVRHRRLRLPGRGRRSPA*
Ga0126314_109020331	3300010042	Serpentine Soil	DLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDDGRRRRLRLTGRGRRPLA*
Ga0126314_111365611	3300010042	Serpentine Soil	STGCPHLAQTVVSVIGDGGRRRRLRLPGRRGRSPA*
Ga0126311_105514721	3300010045	Serpentine Soil	RHRRDAFPSTGCPHLAQTVVSVIGDGEPRRRLRLPGRGGRS*
Ga0126321_10218831	3300010145	Soil	LVLHRHRRDAFPRIGCPHLAQTVVSVVGDGGRRLRLRLPGRGGRSPA*
Ga0126306_100726031	3300010166	Serpentine Soil	DLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRGWLRLPGRGDRSLAKR*
Ga0126306_109738681	3300010166	Serpentine Soil	AFPSTGCPHLAQTVVSVIGDAKPRRRLRLPGRAKRSPA*
Ga0126306_117529461	3300010166	Serpentine Soil	PSTGCPHLAQTVVSVIGDGGRRRWLRLPGRGAGSPV*
Ga0134126_109659112	3300010396	Terrestrial Soil	DAFPSTGCPHLAQTVVSVIGEGGRRRRLRFPGHTGRSRA*
Ga0157347_10698702	3300012502	Arabidopsis Rhizosphere	RDAPAGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDVGRRRRLRLRGRGSTT*
Ga0157291_100733871	3300012902	Soil	AFPRIGCPHLAQTVVSVIGDLEKPRRLRLPGRRSPG*
Ga0157296_102002202	3300012905	Soil	CPHLSQTVVSVIGDGGRRRRLRLPRRGGRSQAQQ*
Ga0164304_104740101	3300012986	Soil	DLFLVLHRHRRDAFPSIGCPHLAQTVVSVIGDSGRSRLRLPGRGRLTA*
Ga0075314_11628022	3300014265	Natural And Restored Wetlands	LDRDTPPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA*
Ga0157376_102613181	3300014969	Miscanthus Rhizosphere	APLGDLFLVLHRHRRNVFPSTGCTHLAQTVVSVLGDDARRNRLRLPNRRRASSTILTRQP
Ga0157376_119224192	3300014969	Miscanthus Rhizosphere	CPHLAQTVVSVIGNGERRRPLPLPRRGRRSPAEP*
Ga0180093_11659562	3300015258	Soil	VLHRHRRDAFPTIGCPHLSQTVVFVIGDGGRRRRLRLPGRGSRSRAQQ*
Ga0132256_1006029073	3300015372	Arabidopsis Rhizosphere	PSTGCPHLAQTVVSVIGDVGRRRRLRLRGRGSTT*
Ga0163161_102562053	3300017792	Switchgrass Rhizosphere	DAFPSTGCPHLAQTVVSVIGDGGRRRRLWLPGRGRRSPA
Ga0190265_100960794	3300018422	Soil	PPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDSGRRRLRLPGRAGGSPA
Ga0190265_101072551	3300018422	Soil	GDLFLVLHRHRRDAFPKTGCLHLAQTVVSVIGDGGRRRRLRLPGRLGRSVGHPLQ
Ga0190265_119782701	3300018422	Soil	LFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRHRRRRVPGRGGRSPA
Ga0190269_118126671	3300018465	Soil	HRHRRDAFPRVGCPHLAQTVVSVIGDGGQRRRLRLPGRGRRSPA
Ga0190270_105227943	3300018469	Soil	HRHRRDAFPSTGCPHLAQTVVSVIGDSGRRRRLRWPGRGSS
Ga0190270_116761521	3300018469	Soil	HRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRWGRPPA
Ga0190270_120572071	3300018469	Soil	HRHRRDAFPSTGCPHLAQTVVSVIGDSGRRRRLRLPGGGRVTFPHS
Ga0190270_132911052	3300018469	Soil	LFLVLHRHRRDAFPSTGCPHLAQTVVSVIGESEHRRRLRLRLRAR
Ga0190271_117379171	3300018481	Soil	FVVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRLRLPGRRGRSPA
Ga0190271_124168182	3300018481	Soil	HRRDAFPSTGCPHLAQTVVSVIGDGGRRRPLRLPGRGGRSPD
Ga0190271_132386362	3300018481	Soil	DLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRWGRPPA
Ga0173481_100674992	3300019356	Soil	LHRHRRDAFPSIGCPHLAQTVVSVIGDSGRRRLRLPGRGRLTA
Ga0190264_101766053	3300019377	Soil	APPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDSGRRRLRLPGRAGGSPA
Ga0247754_10265491	3300023102	Soil	LFLALHRHRRDAFPSTGCPHLAQTVVSVIGDGRRRRRLRLPARGRRSTA
Ga0207643_108149041	3300025908	Miscanthus Rhizosphere	HRDAPAGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGNGERRRPLRLPRRGRRSPAEP
Ga0207662_102389022	3300025918	Switchgrass Rhizosphere	DAPPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGQRRRLRLPGRGRRSPA
Ga0207649_114093832	3300025920	Corn Rhizosphere	RLHRSAPSGDLFLVLHRHRRDAFPSIGCPHLAQTVVSVIGDAGRRRLRLPGRGWLSA
Ga0207700_102942583	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	APPGDLFLILHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA
Ga0207709_101129801	3300025935	Miscanthus Rhizosphere	FPSIGCPHLAQTVVSVIGDSVQRRLRLPGRGRLTA
Ga0207678_101356591	3300026067	Corn Rhizosphere	STGCLHLAQTVVSVIGDDARRPRLRLPGRGSRAPHEL
Ga0207708_104524001	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	APPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGQRRRLRLPGRGRQRADS
Ga0247822_104001751	3300028592	Soil	DAFPRIGCPHLAQTVVSVIGDGGRRRRLRLPGRRSRSRA
Ga0307289_103072702	3300028875	Soil	LVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGSRSPA
Ga0307308_104738011	3300028884	Soil	RDAPPGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRLPGRGRRSPA
Ga0247826_104611091	3300030336	Soil	PGDLFLILHRHRRHAFPSTGCLHLAQTVVSVIGDDARRPRLRLPGRGTRAPHEL
Ga0299913_114967551	3300031229	Soil	LFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGARRRRLRLPGRGRPSPA
Ga0307408_1003278011	3300031548	Rhizosphere	TGCPHLAQTVVSVIGDGGRRGWLRLPGRGDRSLAKR
Ga0307468_1010739561	3300031740	Hardwood Forest Soil	APPGDLFLVLHRHRRDAFPSTGCPHLGQTGVSVIGDGGRRRRLRLPGRRSRSRA
Ga0310907_108031102	3300031847	Soil	DEDVPSGDLFLVLHRHRRDAFPSTGCPHLAQTVVSVIGDGGRRRRLRFPGRRRRSTA
Ga0307406_103026391	3300031901	Rhizosphere	PSTGCPHLAQTVVSVIGDGGRRGWLRLPGRGDRSLAKR
Ga0307416_1002296901	3300032002	Rhizosphere	FLVLHRHRRDGFPSTGCPHLAQTVVSVIGDARPRRRLRLPGRANRSPA
Ga0310906_100755833	3300032013	Soil	RDAFPSTGCPHLAQTVVSVIGDGGRRRRLRFPGRRRRSTA
Ga0310890_112955611	3300032075	Soil	QHRRDAFPTLGCPHLSQTVVSVIGDSGRRRRLRWPGRGSRSQAQQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100608

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences