Scaffold Ga0126315_10071582

Overview

Basic Information

• Taxon OID: 3300010038
• Scaffold ID: Ga0126315_10071582
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1932
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8724
  • Long. (^o): -122.4268

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030077	Metagenome / Metatranscriptome	186	Y
F041418	Metagenome / Metatranscriptome	160	Y
F102100	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126315_100715822	F030077	GGAGG	MQMQLQPRPSGLPDWLYVAIVAALGLYFIIGAIAWTTFIYNGIEVPDSFTTILATIAGGLVGVLAPTGGSARSSQAGREEGPPAE*
Ga0126315_100715823	F041418	GGA	MTTPAPRCPTCGSLLTGGKHSILASGERLTPWMIHDLPRIAWIVEYRAAELTDEERQIVRDATSRMLRALESDTV*
Ga0126315_100715824	F102100	AGGAGG	VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA*