Scaffold Ga0130028_100542

Overview

Basic Information

• Taxon OID: 3300010023
• Scaffold ID: Ga0130028_100542
• Source Dataset Name: Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Duke University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2003
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.53408
  • Long. (^o): -110.7979

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002795	Metagenome / Metatranscriptome	529	Y
F008135	Metagenome / Metatranscriptome	338	Y
F015735	Metagenome / Metatranscriptome	252	Y
F092113	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130028_1005421	F092113	N/A	TAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPALAPARRRG*
Ga0130028_1005423	F008135	AGGAGG	MRAVNDPRTERVLTEAGAGIARVLDARQRHAIVLVVDVIWYIVAALPPDEDMTCRDVVRLLRWFRKGFQEADDGDE*
Ga0130028_1005424	F002795	AGGAGG	MATNNRLVLRGMVAAYREFTSRKDGRIYRIVTVYGDLVAGEDVLCAIDGYDVFVDSPDYSRGEVVAFPARLQFARDGSGRPVVRLYVDEGVR*
Ga0130028_1005426	F015735	GAGG	MVVYHYWSVEWHPRDDPPYGLPRVVCIARRAVSDPFAGPGLFPADVDRALCYWNRIASGGARDHGAGYEVVWRLSVVADDPDGDAPPDGVWSDDPVYRARRRLLRWIMRWQCPLFADHFAAEHFRASPEYFGLLDSGAEPRCGRVRPAVRAPPHAPKDGARAVELSG*