Scaffold Ga0130028_100225

Overview

Basic Information

• Taxon OID: 3300010023
• Scaffold ID: Ga0130028_100225
• Source Dataset Name: Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Duke University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2972
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat → Terrestrial Hot Spring Microbial Mat Viral Communities From Octopus Spring, Yellowstone National Park, Wyoming

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming
• Coordinates
  • Lat. (^o): 44.53408
  • Long. (^o): -110.7979

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F054900	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0130028_1002251	F001381	GAG	MQYVIATLYVLLWLALAAAAALVLPLWALPASLVQLAVAYVMLRAWLTAAAGGDDGA*
Ga0130028_1002252	F000855	GAGG	MDWLEDFWSKIVSWFDELSAGVHNGIVEWINSLVSIWNGWMDALMHPAQAMPSVPELRWVVDWLGGIADYTRLMYMLVDYVAYASIVQQALIAQLTIVTVGLAFRAWLVIRRVVLVS*
Ga0130028_1002257	F054900	N/A	LMICRARGSIGAMEYERAMLQLMVYCVTLLMLYAVDRWSR*