NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133896_1007409

Scaffold Ga0133896_1007409


Overview

Basic Information
Taxon OID3300010018 Open in IMG/M
Scaffold IDGa0133896_1007409 Open in IMG/M
Source Dataset NameMicrobial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #1 sample H1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1491
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Black Band Disease Transitions

Source Dataset Sampling Location
Location NameBelize: Carrie Bow Cay Field Station
CoordinatesLat. (o)16.80288Long. (o)-88.08213Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053793Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0133896_10074091F053793AGGMAVQENLRPTYNEKILRAMQAERTVKRITFDRTEASPGETLYVSVPKLNKSEVLVPGSLAIRFDIDLSGGHANNFLVQNVTRALVDKMVVKFAGTTLEETVAHDL

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