Scaffold Ga0133896_1007409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133896_1007409

Scaffold Ga0133896_1007409

Overview

Basic Information
Taxon OID	3300010018 Open in IMG/M
Scaffold ID	Ga0133896_1007409 Open in IMG/M
Source Dataset Name	Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #1 sample H1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1491
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Black Band Disease Transitions

Source Dataset Sampling Location
Location Name	Belize: Carrie Bow Cay Field Station
Coordinates	Lat. (^o)	16.80288	Long. (^o)	-88.08213	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053793	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133896_10074091	F053793	AGG	MAVQENLRPTYNEKILRAMQAERTVKRITFDRTEASPGETLYVSVPKLNKSEVLVPGSLAIRFDIDLSGGHANNFLVQNVTRALVDKMVVKFAGTTLEETVAHDL

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