Scaffold Ga0105028_125784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105028_125784

Scaffold Ga0105028_125784

Overview

Basic Information
Taxon OID	3300009993 Open in IMG/M
Scaffold ID	Ga0105028_125784 Open in IMG/M
Source Dataset Name	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	650
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Source Dataset Sampling Location
Location Name	Austin, Texas
Coordinates	Lat. (^o)	30.387	Long. (^o)	-97.7301	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046126	Metagenome / Metatranscriptome	151	Y
F089797	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105028_1257841	F089797	N/A	MVPNAPKHYETHQNKSLGSDGVDRVDLLQKILTQLCGLNFYI
Ga0105028_1257842	F046126	N/A	PNAPKHYETHQNKSLGSDGVDRVDLLQKILTQLCGLNFYINYNSLARFELSIVKQQNRPKCTQTLRNKTKHEFMVQWGGSGESIMKTLDTTSWHELLH*

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