Scaffold Ga0133741_100016

Overview

Basic Information

• Taxon OID: 3300009965
• Scaffold ID: Ga0133741_100016
• Source Dataset Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44015
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location

• Location Name: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133741_10001612	F043991	AGGAG	VSKKTPSVIDYFSLNGDVVEEANEFDGINLEDWIDKRSSIKPSWVGQYSKQMHFDLPDDTEASFYKTPNVIYADILFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0133741_10001613	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYRENNDVDDILVICNTPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDIAIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0133741_10001614	F071329	GAGG	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIIAREVEKQFDETVKAVKEARDHVEIED*
Ga0133741_1000169	F027205	AGGA	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK*