Scaffold Ga0133747_10059

Overview

Basic Information

• Taxon OID: 3300009962
• Scaffold ID: Ga0133747_10059
• Source Dataset Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8937
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location

• Location Name: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133747_1005910	F074985	AGGAGG	VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNSMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMTQINFNRDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0133747_100592	F018385	GGA	MMAENRWDPYKELSIEKDRDPVLDDPIIYGVNVPHFTVTVYSPEGRVSKYWNARILQDQVGNCRIACPRDGKILCFNWFKWTSYMFTHDGMNELVFMPDSRRRVVSQLSFDHVPMKEVN*
Ga0133747_100593	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0133747_100595	F043991	AGGAG	MSKKNSSVIDYFDLNGDMNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*
Ga0133747_100598	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALAEARKRDRAEGKEPREILYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0133747_100599	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*