3300009962: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17

Overview

Basic Information

• IMG/M Taxon OID: 3300009962
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120337 | Gp0151220 | Ga0133747
• Sample Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7410727
• Sequencing Scaffolds: 8
• Novel Protein Genes: 13
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081455	Metagenome	114	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0133747_10027	All Organisms → Viruses	17318
Ga0133747_10059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8937
Ga0133747_10192	All Organisms → cellular organisms → Bacteria	3371
Ga0133747_10234	All Organisms → Viruses → Predicted Viral	2932
Ga0133747_10261	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2739
Ga0133747_10527	All Organisms → Viruses → Predicted Viral	1881
Ga0133747_13958	Not Available	600
Ga0133747_14222	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	578

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0133747_10027	Ga0133747_100272	F105377	VRIPVRDFDNLPLLTPEEAFERAWEVGGPARPVFDRGYRVRGLNDWKAIETLLRQGDVEDVAIASFGLKNFEEIFDAFAMLHERGWHLWQTSANVYVGGEPRTVQAIRAHYRGD*
Ga0133747_10059	Ga0133747_1005910	F074985	VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNSMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMTQINFNRDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0133747_10059	Ga0133747_100592	F018385	MMAENRWDPYKELSIEKDRDPVLDDPIIYGVNVPHFTVTVYSPEGRVSKYWNARILQDQVGNCRIACPRDGKILCFNWFKWTSYMFTHDGMNELVFMPDSRRRVVSQLSFDHVPMKEVN*
Ga0133747_10059	Ga0133747_100593	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0133747_10059	Ga0133747_100595	F043991	MSKKNSSVIDYFDLNGDMNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*
Ga0133747_10059	Ga0133747_100598	F027205	VASRLIVSADDILKAVKESEEFERKALAEARKRDRAEGKEPREILYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0133747_10059	Ga0133747_100599	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0133747_10192	Ga0133747_101926	F081456	LGYRLFLEKGAHMFEEPPIYYILISFIFLIVFGSVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0133747_10234	Ga0133747_102345	F105377	MRDFDDLPLLTPEEAFERAWEDGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVSDITVASFGLKRFEEILDAIAMLHERGWRLWQTSANVYVDGERRTVQAIRAHCPGD*
Ga0133747_10261	Ga0133747_102616	F049707	VVSEYRSPHNDGHDPYILIWEYGSDIRRAEFVERWTEWDETGWTVWYFRLVGGDIMTFSTREWEQKDDVNHLTTIWMKPSLYDIERKAS*
Ga0133747_10527	Ga0133747_105272	F081510	MKLPNVKTIKAAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQSNIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVDSIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFDVPKAALPFGWTDTDGFFLEWDTHEVWNDDKQEYEPQVYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0133747_13958	Ga0133747_139581	F081455	CDGYIKINHKEKLKERFPRNVNTEEKDIPPVEEIGAETVDIIDSAEEAIQQPLQNKDSGIAVNFSQMINKPESVKTELNSVPIEGETKVNVLFPKNEHILGNYVDYDSFKKIKESNTDKVVRAVRLLNYKMADQNAAAAFGRFVSEFNPECDPNKRLQYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLD
Ga0133747_14222	Ga0133747_142222	F018385	MAELINSWLPYQELSIEKDRDPVLDDEIIYGNHVKHFTLTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*