NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133745_11920

Scaffold Ga0133745_11920


Overview

Basic Information
Taxon OID3300009961 Open in IMG/M
Scaffold IDGa0133745_11920 Open in IMG/M
Source Dataset NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAutonomous University of Barcelona
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location NameAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084362Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0133745_119202F084362N/AWSDDKNKPHAKPYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETDAEHKGFWWEK*

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