Scaffold Ga0124832_10006

Overview

Basic Information

• Taxon OID: 3300009959
• Scaffold ID: Ga0124832_10006
• Source Dataset Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46138
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (84.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location

• Location Name: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0124832_1000625	F081456	AGGA	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFSAKLVVTAIGFLLCAMTVILYTISAE*
Ga0124832_1000638	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATIKAVQEARDHVEIED*
Ga0124832_1000640	F043991	GAG	MSKKNPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLADDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0124832_1000643	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0124832_1000644	F036281	GAG	MFSLIRVSEGPVDINDLRARYLGKLETEEGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0124832_1000645	F074985	AGGAGG	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTENAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDAGGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSNTGEQKYLLDHIKAMHID*