3300009959: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1

Overview

Basic Information

• IMG/M Taxon OID: 3300009959
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120337 | Gp0146581 | Ga0124832
• Sample Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6689130
• Sequencing Scaffolds: 6
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F084362	Metagenome	112	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0124832_10003	Not Available	70190
Ga0124832_10006	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	46138
Ga0124832_10039	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12111
Ga0124832_10061	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7260
Ga0124832_10138	All Organisms → Viruses → Predicted Viral	3799
Ga0124832_11248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1191

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124832_10003	Ga0124832_1000320	F105377	MRDFNDLPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAVETLLRQNDVPDITVASFGLKQFEDILSTVLMLHERGWRLWQTSAKVYVDGEIRTVQAIRAHYRGD*
Ga0124832_10003	Ga0124832_1000378	F084362	MNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSKTEAEQKGFWWEK*
Ga0124832_10006	Ga0124832_1000625	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFSAKLVVTAIGFLLCAMTVILYTISAE*
Ga0124832_10006	Ga0124832_1000638	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATIKAVQEARDHVEIED*
Ga0124832_10006	Ga0124832_1000640	F043991	MSKKNPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLADDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0124832_10006	Ga0124832_1000643	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0124832_10006	Ga0124832_1000644	F036281	MFSLIRVSEGPVDINDLRARYLGKLETEEGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0124832_10006	Ga0124832_1000645	F074985	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTENAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDAGGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSNTGEQKYLLDHIKAMHID*
Ga0124832_10039	Ga0124832_1003912	F103434	MVTFRPRRGRYLENGPHAVEVTVAVMSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRDIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVSCDTLGTAAK*
Ga0124832_10061	Ga0124832_100618	F101360	VSKEDALRRAVIAAHVAKVASQEKKKALNELEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTSDPRISARVSPAQEEAIRELITMGDISLIEIENTE*
Ga0124832_10138	Ga0124832_101385	F084362	MNCTFTVRWSDDKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0124832_11248	Ga0124832_112484	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERN*