Scaffold Ga0133742_10007

Overview

Basic Information

• Taxon OID: 3300009958
• Scaffold ID: Ga0133742_10007
• Source Dataset Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53570
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (85.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location

• Location Name: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133742_1000714	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIS*
Ga0133742_1000715	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDTTVKAVQEARDHVEIED*
Ga0133742_1000717	F018385	GGA	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0133742_1000724	F067847	AGGA	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYKGILPEKIMKQVAEDPKYKELDSKLKETELKNL*
Ga0133742_1000728	F081456	AGGAG	MFEEPPIYYILISLIFLIVFGAISMATWMVWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE*
Ga0133742_100078	F074985	AGGAGG	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTCPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDCKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYFLDHIKAMHID*
Ga0133742_100079	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAERERGHWYTFRMSDDQNSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*