Scaffold Ga0133746

Basic Information
Taxon OID	3300009956 Open in IMG/M
Scaffold ID	Ga0133746_10100 Open in IMG/M
Source Dataset Name	Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Autonomous University of Barcelona
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009956 Open in IMG/M

Scaffold ID

Ga0133746_10100 Open in IMG/M

Source Dataset Name

Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Autonomous University of Barcelona

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4484
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4484

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location Name	Alicante,Spain
Coordinates	Lat. (^o)	38.3852246	Long. (^o)	-0.5132249	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Alicante,Spain

Coordinates

Lat. (^o)

38.3852246

Long. (^o)

-0.5132249

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133746_1010010	F074985	AGGAG	MMELTDGGWYKTPRIINGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESSVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQDVSYI
Ga0133746_101003	F071329	AGGA	MLPVAKIIISGLTSIGAGMIASNLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0133746_101004	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNSTDLIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0133746_101005	F043991	AGGAG	MSQRDKSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0133746_101009	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133746_10100

Overview

Ecosystem & Geography

Associated Families

Sequences