3300009956: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15

Overview

Basic Information

• IMG/M Taxon OID: 3300009956
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120337 | Gp0151219 | Ga0133746
• Sample Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5905879
• Sequencing Scaffolds: 8
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081510	Metagenome	114	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0133746_10006	Not Available	34158
Ga0133746_10021	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	15438
Ga0133746_10047	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8116
Ga0133746_10100	All Organisms → Viruses → Predicted Viral	4484
Ga0133746_10322	All Organisms → Viruses → Predicted Viral	2451
Ga0133746_10737	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1661
Ga0133746_11346	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1166
Ga0133746_12152	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	822

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0133746_10006	Ga0133746_1000610	F105376	MNKNNEQPEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLATHEKEAEEKYVKRTEVEGVMNFWKLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQTQVRSK*
Ga0133746_10021	Ga0133746_100218	F101360	VSKENSLRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTTQEEAIRELISTGDISILEIEGGDA*
Ga0133746_10047	Ga0133746_1004713	F049707	VVSEYKSPHNDGHDPYILIWEYGSDIRRVEFVERWTAWDETGWTVWYFRLVGGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKEN*
Ga0133746_10100	Ga0133746_1010010	F074985	MMELTDGGWYKTPRIINGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESSVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQDVSYI
Ga0133746_10100	Ga0133746_101003	F071329	MLPVAKIIISGLTSIGAGMIASNLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0133746_10100	Ga0133746_101004	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNSTDLIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0133746_10100	Ga0133746_101005	F043991	MSQRDKSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0133746_10100	Ga0133746_101009	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0133746_10322	Ga0133746_103223	F081510	MKAIKSAAKHSYTVSKILAKKYAPVALVTTGLVGYGVAVYKGIQSGKKLEATKAKYEAKDEAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTMVTEEHARYRLRAKEVLDEETFKKIDAPIETKKVEIDGKEVEVESIVPKEGDFYGRWFKYSRHYASDDPDYNEAWVKEVDNMLTQKINTQSGGGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYLEWDTHEVWNEDKQEHEPQIYVRWQTPRNLYSTTNLRDIIPGRKELA*
Ga0133746_10737	Ga0133746_107374	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN*
Ga0133746_11346	Ga0133746_113461	F051214	MGYRSLKGAHMPGKIIANHTHLRIDTEFIELGDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHNENITLKPIYIYNNREYQIACEFLRQILHDRIDLKKEW
Ga0133746_12152	Ga0133746_121522	F051214	MSGKIIANHTHLRIDTEFIELGDCFEALRRGMEYKEKNDADDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLL*