Scaffold Ga0133748

Basic Information
Taxon OID	3300009955 Open in IMG/M
Scaffold ID	Ga0133748_10012 Open in IMG/M
Source Dataset Name	Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Autonomous University of Barcelona
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009955 Open in IMG/M

Scaffold ID

Ga0133748_10012 Open in IMG/M

Source Dataset Name

Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Autonomous University of Barcelona

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29391
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (87.80%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29391

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (87.80%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location Name	Alicante,Spain
Coordinates	Lat. (^o)	38.3852246	Long. (^o)	-0.5132249	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Alicante,Spain

Coordinates

Lat. (^o)

38.3852246

Long. (^o)

-0.5132249

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F074985	Metagenome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0133748_1001224	F018385	GGA	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWIHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0133748_1001229	F043991	GAG	MSQRDKSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPSWVGKYSHQLHFDLADDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0133748_1001233	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYEARQYHVKSFMRVPGSTDLWITAEREKDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0133748_1001234	F074985	AGGAGG	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133748_10012

Overview

Ecosystem & Geography

Associated Families

Sequences