Scaffold Ga0133737_10001

Overview

Basic Information

• Taxon OID: 3300009953
• Scaffold ID: Ga0133737_10001
• Source Dataset Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Autonomous University of Barcelona
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103319
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (84.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location

• Location Name: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133737_10001107	F018385	GGA	MMAELINSWLPYQELSIEKDRDPVTDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQAGYCRVACPREKKILCFNWVRWTAYMFSHDGMNELVFMPDARRRTVSQLSFDHVPMKEVN*
Ga0133737_10001108	F071329	AGG	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVELQFDATIKAVEEARDHIEIED*
Ga0133737_10001114	F027205	N/A	MRAVKESEEFERKALVEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0133737_1000196	F081456	N/A	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*