3300009953: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3

Overview

Basic Information

• IMG/M Taxon OID: 3300009953
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120337 | Gp0151209 | Ga0133737
• Sample Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4936465
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F049707	Metagenome	146	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F095632	Metagenome	105	N
F103430	Metagenome	101	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0133737_10001	All Organisms → cellular organisms → Bacteria	103319
Ga0133737_10004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44052
Ga0133737_10005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43542
Ga0133737_10738	Not Available	1307
Ga0133737_11970	Not Available	804
Ga0133737_12763	Not Available	648

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0133737_10001	Ga0133737_10001107	F018385	MMAELINSWLPYQELSIEKDRDPVTDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQAGYCRVACPREKKILCFNWVRWTAYMFSHDGMNELVFMPDARRRTVSQLSFDHVPMKEVN*
Ga0133737_10001	Ga0133737_10001108	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVELQFDATIKAVEEARDHIEIED*
Ga0133737_10001	Ga0133737_10001114	F027205	MRAVKESEEFERKALVEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0133737_10001	Ga0133737_1000196	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0133737_10004	Ga0133737_1000410	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKAS*
Ga0133737_10005	Ga0133737_1000529	F095632	MSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN*
Ga0133737_10005	Ga0133737_100057	F049707	VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPETGWTVWHFRLEDGRVMKFRALEWEQRDDVNHLTTIYFVPKQKENA*
Ga0133737_10738	Ga0133737_107381	F105376	PQFYFMNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVRRK*
Ga0133737_11970	Ga0133737_119701	F103430	MEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWRGETEQTAILYLSDEHSKVMNTLNKLKEVLDQKAITY
Ga0133737_12763	Ga0133737_127631	F105376	MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVKRR*