Scaffold Ga0130016_10000502

Overview

Basic Information

• Taxon OID: 3300009868
• Scaffold ID: Ga0130016_10000502
• Source Dataset Name: Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85622
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (44.44%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location

• Location Name: Taiwan
• Coordinates
  • Lat. (^o): 25.0
  • Long. (^o): 121.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042481	Metagenome / Metatranscriptome	158	N
F045503	Metagenome / Metatranscriptome	152	N
F050854	Metagenome	144	N
F052751	Metagenome	142	N
F069182	Metagenome	124	N
F069964	Metagenome	123	N
F076776	Metagenome	117	N
F084004	Metagenome	112	N
F092530	Metagenome	107	N
F096530	Metagenome / Metatranscriptome	104	N
F098523	Metagenome	103	N
F098524	Metagenome	103	N
F098576	Metagenome	103	N
F099028	Metagenome	103	N
F104337	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0130016_1000050213	F104337	GAG	MSLEWEKRPEVFDSFSPIGGKLIRRAAVNWRRIQAIDHGLLPALRSAWTACKSELGYATYEDAARALPLRGRLHARVQQVAENLKHFWKQNPAGILMTVDRAGNNIAFKFKTS*
Ga0130016_1000050220	F099028	N/A	MFTVSEVSLRLGPTAIHRRPGVVTRVTPVLLAQAYRGFAAGTLLGRVQTRAQGKLPLASATFSESSGAVLGHDYSWLVRMFKEGPCGERQARLDRIRPQRQYRVSRMFGFLAHDPCVYEQGDELTVQQAGDSITTLVSKKATKSYSVSWPRAAFESCVDTFALRELS*
Ga0130016_1000050223	F069182	N/A	MPTIHAQHIEAARQEFFVRVRRAPCFNVLFKPARWETWRVLGETAEGALRIAKYHFYRSDQIELAEAGAATAA*
Ga0130016_1000050236	F098524	AGTAGG	VLAGRVIFWWPADGLAIGYHLGHGGAFVTHHLETPYNGDMDTGDDDEKQFEKTLLEAGKPDAGATIEASVKESPSRSATAPEDGGTEVESDAEEPGVDPIQTLLNRRYPRLALHRDTLRLLQRVEWMNRNQGVNDFCNDAIRYVILAREAGTTSFNDLQAVSAAIDARLDELSVILLRLHQATGDLSIIVEHQKLIGAYGERLRKAATTGA*
Ga0130016_1000050237	F050854	N/A	MDALLTLAIGKLADHYQVSEDYLRRALLLRAVAELNAVTDRSKPATPEQLEVILTNLNRQLNEVLEGFRRQIVEADNAVQSAHIAIAVVERVAGVLRGQTAGPPLPSAGSR*
Ga0130016_1000050241	F076776	GGA	VKLQQNQSRVPLQLRQGLVAEVRASLKPGMEFNALYGQLLSRLEEVENPSLEQAKALLRNPETLLAEREQKKAAAVKAQAQLKAQIVNANIPKHTPDREKLVADTLAFVNRFPTLNAAEVKRVTILRQTNGNRDLRAVPFSAIASPESLAENLDGAQKLDDGNGKAGVHFSTSCQMFFLQETALLPSEKSPTVFPSLVEIS*
Ga0130016_1000050242	F069964	N/A	VSETAAQVKVMDIRQLREEKPKLGWLAEVRFNIFHNHRKLEELEPPVSAHLKANGPVKVVTRANLFEFTPDGERVNLVIREGRKLDGLPYQTAPEAVQLFCNEAITLHKNQHLFWHLTEDEVRQVATEFQDLAGPGGIHVRKGRHALLLQIKDGRLDLSVCDNC*
Ga0130016_1000050249	F092530	AGG	LGAITVVCLMPALQKDYAGSRLRTSLFAMIGACLIYPSAILVYARKAIAQRHGDWKLTLFILGITYVLFRMVR*
Ga0130016_1000050269	F084004	N/A	MRLLDIAAFGVPARQNPQESFIMERCMRTTVAILVLLAAGGLAARAGNDSLEFVYDCFIARFADGNPAWKTEITLEADLNKPPRPPYRLHYNDSLGYYTYRPKHWSELNDYERFALRNDPRLSDFIRQNADSLRNGQFGAFAGSTNATQAALKPGAGARDQSNIARTGRLEHAPAAEATSDSQNAGVLTQEGENRWGYRFEPGDLLNSKPLRLVEVAP*
Ga0130016_1000050273	F052751	N/A	MFTRRPSDQSWIKYLLSTGLVTVDQLERMRANQNQVDVAELLVRHAQLFGRGLWLNQALQQDRFHYIPVNNLDERELAELQQLQPSLLSRCLSDGILPLGFCHQTLYLGLLRYDPEFPELKEILRSVPAELRVCLVPVAPADYGKLNQQLRGAATH*
Ga0130016_1000050277	F042481	N/A	MNRPLFAFFSALTLLTFLIERYTSWYAPGCCVTQVVSLGALRMLFFGFFAIQVSVPFYHWAKDPNFTTDRASGLVLFVSIVAAVFGFFIYNVPLAALNAIVRLAQLCMNS*
Ga0130016_1000050284	F098576	N/A	VSNPRHFVVTHSHRHGVTTGLVIGQKGQRKPTPAESIKLLQLDFEPDREEFVEVTEVAPVFLSKPRRNPETTGGERARLIAQWAGRLYDMTASWQGPIGMQLAYLFAAMARGSHVALKRHSALVRLLRQEAVPASDPIWNYIRIE*
Ga0130016_1000050285	F045503	N/A	MKVKLPSPAPGNQRVREIQQWLGAYGGSVANAYVVNAGALRELGAERGILEKILWRVPREKPEMPLTGEAMMELLAPKRLMREVRKQLKLDTQEHHAHTKAFEQSRQQLIASKIPADAQNREAVIREVESWFKMVLPEMRNTKAILRATELRLEARRDIHPVLPPLRATTELVEQLNKREPGRVYIDRDGGELLLLKPGEQAVLNEKGLRIENGAPAMPAPDMN*
Ga0130016_1000050286	F098523	AGGGGG	VNLDKLKDALQKARIAFSERLVPHANPATTCLVVQRVGYALSVTPTLYYHGPVVEIRPSGGPRISFISNKDPAELVAVMDTFVQVRKWAARLQPKWATRQMALITGSNPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVTKYKIGASPKLIATDLIQLHQENTPKRSWESFVEDWNCQYSASFGHELALSASYIYAWNGMRFLMDGDELSMDVWGPVFSAAFPEAIRLLESIQAVLGKTVKGRGNEGGPPGEAVPV*
Ga0130016_1000050289	F096530	N/A	MSTPEDGLVRFPPGTTTRSLGRNGTFITTGIYVDCFDHKITFTPQNSHDHMARCAIELPNDCRVLLGLILEILNASRATREALQQELAART*