Scaffold Ga0116223_10328192

Overview

Basic Information

• Taxon OID: 3300009839
• Scaffold ID: Ga0116223_10328192
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 909
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001195	Metagenome / Metatranscriptome	750	Y
F056831	Metagenome / Metatranscriptome	137	Y
F062919	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116223_103281921	F056831	N/A	MDFVQHFRDLLIALEAARLGATLVTENIRDFARWASLLASTRKTLRLFDPSRSS*
Ga0116223_103281922	F062919	GAGG	MDALPAGLVLFDTGVYIRFGRGEDYAFLGRDAALFHRTVLSAVVAAELYAGTRSHREKRTLDKLCGAHRALGHFT*
Ga0116223_103281923	F001195	GGAG	MSKIALTRTNLLLEVGKVRRLRKALQSPSNSEAVRRAIDERLAVEIGLRALQNLQRLGGPEDVFGRAAPRAR*