Scaffold Ga0105088_1062634

Overview

Basic Information

• Taxon OID: 3300009810
• Scaffold ID: Ga0105088_1062634
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 644
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005536	Metagenome	397	Y
F027305	Metagenome	195	Y
F105848	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105088_10626341	F005536	AGGGGG	MWADSPDCPACATGWHTRCGWPEQADDGDGELVERCCDGLLIARRRPL
Ga0105088_10626342	F027305	AGGAG	MMANDRMSSISFGVIVPAGTLYDSHHHWYISAGVLNASVRFDAGGYSSAHIQGPPAALRELAAALLDAADRSDSPVSAVVEGVAG*
Ga0105088_10626343	F105848	N/A	VKVTGLVAQPWTMNDRSGVAFRAARIEPAVPQAKAS*