Scaffold Ga0126374_10023728

Overview

Basic Information

• Taxon OID: 3300009792
• Scaffold ID: Ga0126374_10023728
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2746
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002109	Metagenome / Metatranscriptome	592	Y
F009437	Metagenome / Metatranscriptome	318	Y
F099816	Metagenome	103	Y
F100574	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126374_100237281	F100574	GGCGG	MSNRNSQLITICMLIGALAIIGLALTGTLQMRVSQSP
Ga0126374_100237282	F002109	AGAAG	MDIYEVELCRGGRWEQQDARFVAATDADEAAYKVTREHLHSEGERRKVRLRVRRLGNGSPPPKLFYAA*
Ga0126374_100237287	F099816	N/A	MSSYSIDDPKHWLECAKEARALAEQIDDPEVKRMIRQNADDYERLAKRAEERSVGRWPKLK*
Ga0126374_100237288	F009437	AGGAGG	VSYYATYCQDQAADCARRARLASSPEIVAYCRSLELRWLKLAARVQETDGALGHESDPAATWFPLPERPATYPVEYGKRAGELIARCARSLRKRK*