Metagenome / Metatranscriptome Family F100574

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100574
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	MQSDRKSRLITICMLARALVMIGLALTGTLQMRVSRSPVAQVVT
Number of Associated Samples	68
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.37 %
% of genes near scaffold ends (potentially truncated)	68.63 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (70.588 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.510 % of family members)
Environment Ontology (ENVO)	Unclassified (45.098 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.745 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04392	ABC_sub_bind	11.76
PF04780	DUF629	5.88
PF00589	Phage_integrase	4.90
PF13460	NAD_binding_10	1.96
PF00550	PP-binding	0.98
PF14659	Phage_int_SAM_3	0.98
PF13374	TPR_10	0.98
PF04964	Flp_Fap	0.98
PF06823	DUF1236	0.98
PF12697	Abhydrolase_6	0.98
PF04134	DCC1-like	0.98
PF04191	PEMT	0.98
PF01068	DNA_ligase_A_M	0.98
PF00753	Lactamase_B	0.98
PF01650	Peptidase_C13	0.98
PF01243	Putative_PNPOx	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	11.76
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.98
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.98
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.98
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.78 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	52.94 %
Unclassified	root	N/A	29.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	38.24 %
Unclassified	root	N/A	29.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.88 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.24 %
Unclassified	root	N/A	29.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.24 %
Unclassified	root	N/A	29.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.24 %
Unclassified	root	N/A	29.41 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.98 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	38.24 %
Unclassified	root	N/A	29.41 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	0.98 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104601261	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300000956\|JGI10216J12902_108186101	Not Available	527	Open in IMG/M
3300005181\|Ga0066678_10780989	Not Available	633	Open in IMG/M
3300005332\|Ga0066388_100145636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2940	Open in IMG/M
3300005332\|Ga0066388_103915486	Not Available	759	Open in IMG/M
3300005332\|Ga0066388_104269567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300005363\|Ga0008090_10221792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1528	Open in IMG/M
3300005713\|Ga0066905_100090832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2041	Open in IMG/M
3300005713\|Ga0066905_100321370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1224	Open in IMG/M
3300005713\|Ga0066905_100659126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300005713\|Ga0066905_100882406	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300005713\|Ga0066905_101164777	Not Available	687	Open in IMG/M
3300005713\|Ga0066905_102108785	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300005764\|Ga0066903_102961340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300005764\|Ga0066903_103151030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	892	Open in IMG/M
3300005764\|Ga0066903_103483351	All Organisms → cellular organisms → Bacteria → Proteobacteria	848	Open in IMG/M
3300005764\|Ga0066903_104857353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300005764\|Ga0066903_105493134	Not Available	668	Open in IMG/M
3300005764\|Ga0066903_105818468	Not Available	647	Open in IMG/M
3300005764\|Ga0066903_106248887	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300005764\|Ga0066903_107393692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300005764\|Ga0066903_108609364	Not Available	519	Open in IMG/M
3300005764\|Ga0066903_109092941	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006852\|Ga0075433_10922085	Not Available	762	Open in IMG/M
3300009792\|Ga0126374_10023728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2746	Open in IMG/M
3300010043\|Ga0126380_10461368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	963	Open in IMG/M
3300010043\|Ga0126380_11415392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300010046\|Ga0126384_10013209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5196	Open in IMG/M
3300010046\|Ga0126384_11426219	Not Available	646	Open in IMG/M
3300010047\|Ga0126382_10046275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2516	Open in IMG/M
3300010047\|Ga0126382_10650243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300010048\|Ga0126373_12850846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300010358\|Ga0126370_10095229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2043	Open in IMG/M
3300010360\|Ga0126372_10927450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300010361\|Ga0126378_10658171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1160	Open in IMG/M
3300010366\|Ga0126379_10055154	All Organisms → cellular organisms → Bacteria	3298	Open in IMG/M
3300010376\|Ga0126381_104148446	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300010376\|Ga0126381_104800955	Not Available	520	Open in IMG/M
3300010398\|Ga0126383_10331754	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300010398\|Ga0126383_12030331	Not Available	662	Open in IMG/M
3300010398\|Ga0126383_13436168	Not Available	517	Open in IMG/M
3300012198\|Ga0137364_10687681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300012199\|Ga0137383_10469733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	921	Open in IMG/M
3300012201\|Ga0137365_10282211	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300012205\|Ga0137362_10016940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5521	Open in IMG/M
3300012209\|Ga0137379_10126924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2452	Open in IMG/M
3300012361\|Ga0137360_11409240	Not Available	600	Open in IMG/M
3300012948\|Ga0126375_12013520	Not Available	511	Open in IMG/M
3300012971\|Ga0126369_11158808	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300016270\|Ga0182036_11754054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300016357\|Ga0182032_10710402	Not Available	844	Open in IMG/M
3300016357\|Ga0182032_11428535	Not Available	599	Open in IMG/M
3300016404\|Ga0182037_10168883	Not Available	1668	Open in IMG/M
3300016422\|Ga0182039_10479062	Not Available	1071	Open in IMG/M
3300016422\|Ga0182039_10520311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1030	Open in IMG/M
3300016422\|Ga0182039_10739173	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300018468\|Ga0066662_10277538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1391	Open in IMG/M
3300021560\|Ga0126371_12500467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300021560\|Ga0126371_12606031	Not Available	612	Open in IMG/M
3300021560\|Ga0126371_13886485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300025910\|Ga0207684_10474403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1073	Open in IMG/M
3300026320\|Ga0209131_1177192	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300026557\|Ga0179587_10121225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1605	Open in IMG/M
3300031561\|Ga0318528_10061915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1912	Open in IMG/M
3300031573\|Ga0310915_10084815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2113	Open in IMG/M
3300031679\|Ga0318561_10492581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300031719\|Ga0306917_10391853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300031720\|Ga0307469_11407606	Not Available	665	Open in IMG/M
3300031723\|Ga0318493_10851283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300031724\|Ga0318500_10239664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	877	Open in IMG/M
3300031736\|Ga0318501_10020647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2763	Open in IMG/M
3300031744\|Ga0306918_10704507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300031765\|Ga0318554_10754475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031779\|Ga0318566_10469158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300031796\|Ga0318576_10279911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300031846\|Ga0318512_10658939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300031859\|Ga0318527_10345544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300031890\|Ga0306925_12035001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300031912\|Ga0306921_10758205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1111	Open in IMG/M
3300031912\|Ga0306921_10813154	Not Available	1067	Open in IMG/M
3300031942\|Ga0310916_10244671	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300031942\|Ga0310916_11031292	Not Available	685	Open in IMG/M
3300031946\|Ga0310910_10599825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	873	Open in IMG/M
3300031947\|Ga0310909_10291738	Not Available	1366	Open in IMG/M
3300031954\|Ga0306926_10534707	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300031954\|Ga0306926_11770323	Not Available	702	Open in IMG/M
3300032001\|Ga0306922_10555994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1219	Open in IMG/M
3300032025\|Ga0318507_10191344	Not Available	882	Open in IMG/M
3300032039\|Ga0318559_10149971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300032042\|Ga0318545_10183989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300032051\|Ga0318532_10134287	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300032059\|Ga0318533_10225449	Not Available	1349	Open in IMG/M
3300032063\|Ga0318504_10485673	Not Available	591	Open in IMG/M
3300032063\|Ga0318504_10515316	Not Available	573	Open in IMG/M
3300032064\|Ga0318510_10080035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1212	Open in IMG/M
3300032094\|Ga0318540_10436566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300032180\|Ga0307471_101244229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300032180\|Ga0307471_102298241	Not Available	680	Open in IMG/M
3300032205\|Ga0307472_101959192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300032261\|Ga0306920_101708827	All Organisms → cellular organisms → Bacteria → Proteobacteria	891	Open in IMG/M
3300033290\|Ga0318519_10611315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.02%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.41%
Loam	Environmental → Terrestrial → Soil → Loam	19.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1046012611	3300000956	Soil	KSQLITICMLIGALAMIGLTLTGTLQMRVSQSPVAVLAR*
JGI10216J12902_1081861011	3300000956	Soil	MRSDPKSRLITICMLAAAVVMIGLALTGTLQMRVSR
Ga0066678_107809892	3300005181	Soil	MSERKSRLITICMLAGAVVMIGLVLTGTLQMKVSRSPVAQVVTK*
Ga0066388_1001456364	3300005332	Tropical Forest Soil	MQRDRKSRLITICMLAGAMIGLVLTGTLQIRVSHSPLAYIVTK*
Ga0066388_1039154862	3300005332	Tropical Forest Soil	MQSDRKSRLITICMLAGAVVMIGLVLTGTLQMRVSHSPVAVLAR*
Ga0066388_1042695672	3300005332	Tropical Forest Soil	MQSERKSRLITICMLASALIMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0008090_102217921	3300005363	Tropical Rainforest Soil	MSDRNSQLITICMLIGALAIIGLVLTGTLQMRVPQSPVAVLTR*
Ga0066905_1000908323	3300005713	Tropical Forest Soil	MSDLKSRVITICMLVGALAMIGLVLTGTLQMRVSHSPVVAVVGQ*
Ga0066905_1003213702	3300005713	Tropical Forest Soil	MQNDRRSRLITICMLAGAVVMIGLVLTGTLQIRVSHSPIAYVVIK*
Ga0066905_1006591262	3300005713	Tropical Forest Soil	MSDRNSQLITICMLIGALAIIGLALTGTLQMRVSQSPVAALTR*
Ga0066905_1008824061	3300005713	Tropical Forest Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVSHSPITALS
Ga0066905_1011647772	3300005713	Tropical Forest Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVSHSPIT
Ga0066905_1021087851	3300005713	Tropical Forest Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVS
Ga0066903_1029613402	3300005764	Tropical Forest Soil	MQSDRKSRLITICMLASALVMIGLALTGTLQMRVSHS
Ga0066903_1031510301	3300005764	Tropical Forest Soil	MQSYRKSRLITICMLAGAVVMIGLVLTGTLQIRVSHSPLAYVVTK*
Ga0066903_1034833512	3300005764	Tropical Forest Soil	MQSDRKGRLITICMLAGAIVMIGLVLAGTLQMRVSHAQVAVVAR*
Ga0066903_1048573532	3300005764	Tropical Forest Soil	MSNRNSQLITICMLIGALAIIGLALTGALQMRVSQSPVAALTR*
Ga0066903_1054931342	3300005764	Tropical Forest Soil	VMQSERKSQLITICMLASALVIIGLVLTGTLQMRVLRSPVAQLVTK*
Ga0066903_1058184681	3300005764	Tropical Forest Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQMRVLR
Ga0066903_1062488871	3300005764	Tropical Forest Soil	EPFVMRSDPKSRLITICMLAAAVVMIGLALTGTLQMRVSHSPIAYVVTK*
Ga0066903_1073936922	3300005764	Tropical Forest Soil	ITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0066903_1086093641	3300005764	Tropical Forest Soil	MQSERKSRLITICMLAGALVMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0066903_1090929412	3300005764	Tropical Forest Soil	ICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0075433_109220852	3300006852	Populus Rhizosphere	MSDLKGRLITICMLVGALAMIGLVLTGTLQLRVSRSPVAQIAIK*
Ga0126374_100237281	3300009792	Tropical Forest Soil	MSNRNSQLITICMLIGALAIIGLALTGTLQMRVSQSP
Ga0126380_104613683	3300010043	Tropical Forest Soil	VMSDRNSQLITICMLIGALAIIGLALTGTLQMRVSQSPVAVLTR*
Ga0126380_114153921	3300010043	Tropical Forest Soil	MSDLKSRVITICMLVGALAVIGVVLTGTLQMRVSHSPVVAVVGQ*
Ga0126384_1001320912	3300010046	Tropical Forest Soil	MSNRNSQLITICMLIGALAIIGLALTGTLQMRVSQSPVA
Ga0126384_114262192	3300010046	Tropical Forest Soil	MQSDRKSQLITICMLIGALAMIGLALTGTLQIRVSNSPIAYVVTK*
Ga0126382_100462754	3300010047	Tropical Forest Soil	MSDRNSQLITIRMLIGALAIIGLALTGTLQMRVSQSPVAVLTR*
Ga0126382_106502433	3300010047	Tropical Forest Soil	PLFVMSDRNSQLITICMLIGALAIIGLVLTGTLQMRVSQSPVAVLTR*
Ga0126373_128508462	3300010048	Tropical Forest Soil	MQSDRKSRLITICMLARALVMIGLALTGTLQMRVSRSPVAQVVT
Ga0126370_100952292	3300010358	Tropical Forest Soil	MQSDRKSRLIAICMLAGAVVMIGLALTGTLQMRVSRSPIVYVVTK*
Ga0126372_109274501	3300010360	Tropical Forest Soil	MSDRNSQLITICMLIGALAIIGLALTGTLQMRVSQSPVA
Ga0126378_106581711	3300010361	Tropical Forest Soil	TICMLASALIMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0126379_100551543	3300010366	Tropical Forest Soil	MSDRKSGLITICMLIGAVVMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0126381_1041484461	3300010376	Tropical Forest Soil	MRSDRKSRLITICMLASALVMIGLALTGTLQMRVSHSPKL
Ga0126381_1048009551	3300010376	Tropical Forest Soil	MSDRKSQFIAICMFIGAVTMIGLALTGTLRMRVVH
Ga0126383_103317541	3300010398	Tropical Forest Soil	LITICMLIGAVVMIGLVLTGTLQMRVLRSPVTQLVTK*
Ga0126383_120303311	3300010398	Tropical Forest Soil	MQSERKSRLITICMLASALVMIGLALSGTLQMRVSRSPVAQVVTK*
Ga0126383_134361681	3300010398	Tropical Forest Soil	LLCYRKSRLITICMLASAIVMIGLALTGTLQMRVSHSPITA
Ga0137364_106876812	3300012198	Vadose Zone Soil	MSELKDRLITICMLVGAFAMIGLVLTGTLQMRVSHSPVAVVTR*
Ga0137383_104697332	3300012199	Vadose Zone Soil	MSEPKDRLITICMLIGAFAMIGLALTGTLQMRVSHSPVVVVTR*
Ga0137365_102822113	3300012201	Vadose Zone Soil	MSELKDRLITICMLVGAFAMIGLALTGSLQIRVSHSPVAVVTR*
Ga0137362_100169403	3300012205	Vadose Zone Soil	MRDRKSQLITICMLIGALAIIGLALTGTLQMRVSRSPVAQVVIK*
Ga0137379_101269243	3300012209	Vadose Zone Soil	MSERKSRLITICMLAGAVVMIGLVLTGTLQMKVSRS
Ga0137360_114092402	3300012361	Vadose Zone Soil	MSERKSRLITICMLAGAVVMIGLVLTDTLQMKVSRSPVAQVVTK*
Ga0126375_120135201	3300012948	Tropical Forest Soil	LITICMLAGAVLMIGLVLTGTLQIRVSNSPIAYVVTK*
Ga0126369_111588081	3300012971	Tropical Forest Soil	MQSDRKSRLITICMLAGAVVMIGLVLTGTLQIRVSHSPIAYVVTK*
Ga0182036_117540541	3300016270	Soil	MQSDRKSRLITICMLASALVMIEALTGTLQMRVSHSPKLVSSQ
Ga0182032_107104021	3300016357	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPV
Ga0182032_114285352	3300016357	Soil	FVMQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0182037_101688831	3300016404	Soil	GGPFVMQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0182039_104790622	3300016422	Soil	ERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0182039_105203112	3300016422	Soil	FVMSDRNSQLITICMLIGALAIIGLVLTGTLQMRVSQPPVAVLTR
Ga0182039_107391731	3300016422	Soil	RKSQLITICMLASALVIIGLVLTGTLQMRVLRSPVTQLVTK
Ga0066662_102775382	3300018468	Grasslands Soil	MSERKSRLITICMLAGAVVMIGLVLTGTLQMKVSRSPVAQVVTK
Ga0126371_125004672	3300021560	Tropical Forest Soil	MQSERKSRLITICMLARALVMIGLALTGTLQMRVSHSPKLVSSQ
Ga0126371_126060311	3300021560	Tropical Forest Soil	PLFVMSDRNSQLITICMLIGALAIIGLALTGTLQMRVSQSPVAVLTR
Ga0126371_138864852	3300021560	Tropical Forest Soil	MQSDRKSRLITICMLASALVMIGLALTGTLQMRVSHSP
Ga0207684_104744032	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MQSDRKSRLIAICMLAGAVVMIGLALTGTLQMRVSRSSVTQVVTIVTK
Ga0209131_11771921	3300026320	Grasslands Soil	KSQLITICMLIGALAIIGLALTGTLQMRVSRSPVAQVVIK
Ga0179587_101212251	3300026557	Vadose Zone Soil	CYAMRDRKSQLITICMLIGALAIIGLALTGTLQMRVSRSPVAQVVIK
Ga0318528_100619153	3300031561	Soil	MSDRNSQLITICMLIGALAIFGLALTGTLQMRVSQSPVAVLTR
Ga0310915_100848154	3300031573	Soil	QLITICMLIGALAIFGLALTGTLQMRVSQSPVAVLTR
Ga0318561_104925812	3300031679	Soil	MSDRNSQLITICMLIGALAIIGLVLTGTLQMRVSQSPVAVLTR
Ga0306917_103918533	3300031719	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQIRVLRSPVIQL
Ga0307469_114076061	3300031720	Hardwood Forest Soil	MSDLKGRLITICMLVGALAMIGLVLTGTLQLRGSRSPVAQIAIK
Ga0318493_108512832	3300031723	Soil	MQSDRKSRLITICMLASALVMIGLALTGTLQMRVSHSPITRVVPN
Ga0318500_102396641	3300031724	Soil	MQSERKSQLITICMLASALVIIGLVLTGTLQMRVLRSPVT
Ga0318501_100206472	3300031736	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0306918_107045072	3300031744	Soil	MSDRNSQLITICMLIGALAIIGLVLTGTLQMRVSQPPVA
Ga0306918_113979962	3300031744	Soil	DRKSRLITICMLASAIVMIGLALTGTLQMRVSHSPITALSQIDRP
Ga0318554_107544751	3300031765	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQIRVLR
Ga0318566_104691582	3300031779	Soil	MQSDRKSRLITICMLASALVMIGLALTGTLQMRVSH
Ga0318576_102799111	3300031796	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPVT
Ga0318512_106589391	3300031846	Soil	ERKSRLITICMLASALIMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0318527_103455443	3300031859	Soil	QLITICMLASALVIVGLVLTGTLQMRVLRSPVTQLVTK
Ga0306925_120350012	3300031890	Soil	MQSDRKSRLITICMLASALVMIGLALTGTLQMRVSHSPKLVS
Ga0306921_107582051	3300031912	Soil	SDRKSRLITICMLASALVMIGLALTGILQMRVSHSPITRVVPN
Ga0306921_108131541	3300031912	Soil	MSDRNSQLITICMLIGALAIIGLVLTGTLQMRVSQPPVAVLTR
Ga0310916_102446711	3300031942	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRS
Ga0310916_110312921	3300031942	Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVSHSTIT
Ga0310910_105998251	3300031946	Soil	ITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0310909_102917383	3300031947	Soil	LFVMSDRNSQLITICMLIGALAIIGLVLTGTLQMRVS
Ga0306926_105347072	3300031954	Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVSH
Ga0306926_117703233	3300031954	Soil	NGEPFVMQSERKSQLITICMLASALVIIGLVLTGTLQMRVLRSPVAQLVTK
Ga0306922_105559941	3300032001	Soil	ITICMLIGALAIIGLVLTGTLQMRVSQSPVAVLTR
Ga0318507_101913443	3300032025	Soil	VMQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSPVTQLVTK
Ga0318559_101499713	3300032039	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQIRVLRSPVI
Ga0318545_101839892	3300032042	Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVSHSPI
Ga0318532_101342871	3300032051	Soil	GEPIVMQSERKSQLITICMLASALVIIGLVLTGTLQMRVLRSPVTQLVTK
Ga0318533_102254493	3300032059	Soil	MQSERKSRLITICMLASALVMIGLVLTGTLQMRVLRSP
Ga0318504_104856732	3300032063	Soil	MQSDRKSRLITICMLASALVMIEALTGTLQMRVSHSPKLV
Ga0318504_105153162	3300032063	Soil	MQSDHKSQLITICMLIGALATIGFALTGTLQMRVS
Ga0318510_100800351	3300032064	Soil	MQSDRKSRLITICMLASALVMIGLALTGNLQMRVSHSPKLVSSQ
Ga0318540_104365661	3300032094	Soil	MQSERKSQLITICMLASALVIVGLVLTGTLQMRVLRSPVT
Ga0307471_1012442293	3300032180	Hardwood Forest Soil	MQSDRKSRLITICMLAGALVMIGLVLSGTLQLRVS
Ga0307471_1022982412	3300032180	Hardwood Forest Soil	MSDRKSQLITICMLIGALAMIGLALTGALQMRVSHSPVAVLAR
Ga0307472_1019591921	3300032205	Hardwood Forest Soil	MQSDLKSRLTTICMLAGALVMIGLVLTGTLQLRVSRSPTAYVATK
Ga0306920_1017088271	3300032261	Soil	MRSDRKSRLITICMLASAIVMIGLALTGTLQMRVSHSPFT
Ga0318519_106113151	3300033290	Soil	VMQSERKSQLITICMLASALVIIGLVLTGTLQMRVLRSPVTQLVTK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100574

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences