Scaffold Ga0115012_10029826

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10029826
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3517
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F105146	Metagenome	100	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_100298263	F004771	N/A	MRHIKSGDLVRMKTHNTGFVGIVVGRYPKHTNTGPIQIGIKWFKGSGKVDWEPESWLEVVSESR*
Ga0115012_100298266	F106118	GGAGG	MRVGDLVRCMTVDGKPVGLVVERFTAAHSRLDRPRLRPDIFYVLIPGYEDPFPIRTRQMELVSASR*
Ga0115012_100298268	F105146	GGA	MLEVGNIVKSKYTVERHRARIGLVMQLRDGAFENQPLAQVYWPHSRTFGWVEAKDMEVVGD*