Scaffold Ga0115012_10008237

Overview

Basic Information

• Taxon OID: 3300009790
• Scaffold ID: Ga0115012_10008237
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6276
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 2.405
  • Long. (^o): -13.602
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F037480	Metagenome	168	Y
F057352	Metagenome	136	Y
F094548	Metagenome	106	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115012_1000823716	F057352	GGAG	MMKLWVMHGTYEAELFTSIHLTEKGCALACIADVIDFLGVDSDETALQAINDCYPFTETDGEQTEPFEWNRDKLKEMSSKELWKIFADWTETCWDRMSDRSYYIDATPQMVQA*
Ga0115012_1000823719	F037480	GGAGG	VQVGDLVHMPGSIEPATGIVLRTKPDGINRGTPRLGRVQVYWIEDAEASWEPKKWLEVVSASR*
Ga0115012_1000823720	F106118	AGGA	MGTIKAGDLVRCMTVDGQPVGLVVERFTAAHSRLDRPRLRPDIFYVLIPGYEEPFPIRTRQMEVVSASR*
Ga0115012_100082373	F094548	AGGAG	MIKVGSMIQSKYISAAPPKDGNIGLVMELRNTAEEAHVLAHVYYPKTRTFGWVHVKDMRVLA*
Ga0115012_100082379	F008590	GGAGG	MQVGDLVTYWYQRPRWRKGQSVHVGLIVETGKYTGNRDVKVLWKGSTQPDTECTQHLSIIDDSLTSS*