Scaffold Ga0116226_10029191

Overview

Basic Information

• Taxon OID: 3300009787
• Scaffold ID: Ga0116226_10029191
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5417
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004020	Metagenome	456	Y
F022333	Metagenome	214	Y
F048722	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116226_100291912	F022333	GGAG	MFSISVQNFSSIDDDHKELSLSKETNFKTKAEILDT*
Ga0116226_100291914	F048722	N/A	MNINDFSIKVKNLIDVLASIGIPVDDEDLVVVTLNGFGKDYS*
Ga0116226_100291915	F004020	GGAGG	MFSTQILREVEIKVLKPHFEADTEARMVDIINMKVNLMEVDEETLEEEEVMEVVMEVIEVNNQIAIQTATIVGNLGTWQRTVIKGSMMHEMESCNKKIMHQLAIKVMNNYL*