Scaffold Ga0116231_10023884

Overview

Basic Information

• Taxon OID: 3300009697
• Scaffold ID: Ga0116231_10023884
• Source Dataset Name: Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6028
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Marchantiophyta → Marchantiopsida → Marchantiidae → Marchantiales → Marchantiaceae → Marchantia → Marchantia polymorpha → Marchantia polymorpha subsp. ruderalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024943	Metagenome / Metatranscriptome	203	Y
F028066	Metagenome	192	Y
F058624	Metagenome	134	Y
F093126	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116231_100238841	F058624	AGAAGG	MKKIKFKEGDLVMMFDVRHHRRAYKKLLPKWFGPFVIKKMFTDNGSYELENVDGSPYLDCINHNKLKKVLDM*
Ga0116231_1002388410	F024943	N/A	MVIPVFRGSKGEDPEVFLREYKRACIGTRLRTAAEWFNFFPEFLEGTTSL*
Ga0116231_1002388411	F028066	N/A	MWSGGVIDTRDGHDLVNVVFQSRHLNRIIAGLEMSGPFRDLHREDRENFIMSANPAIGNFLIHEERL*
Ga0116231_100238844	F093126	N/A	MEEFDIDIVHRPGRWHGNVDGLTRAYEGVRDVSEDDDFLDTAIMAINVKETPKKYREIIQYLDGMKFPIEATKAVRTRIVHKSRNYSMIGNQLYFQGKDSVLQ*