NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116172_10171902

Scaffold Ga0116172_10171902


Overview

Basic Information
Taxon OID3300009682 Open in IMG/M
Scaffold IDGa0116172_10171902 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022442Metagenome / Metatranscriptome214Y
F033483Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0116172_101719022F022442N/AVPDRGVQEAVPVTFVPIGEARLDLYTDALLLDIGPDTFIVPLARLADLTAHRRREVVVSRRYWGDAPGVFEDVEQALRLRRSQTDRSLMLTEQGRVYSIPVYLVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEVWA*
Ga0116172_101719023F033483GGAVGVTPGDASVSFDIDGLPVQLVLPERDVELMMWTYRA

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