NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115105_10678009

Scaffold Ga0115105_10678009


Overview

Basic Information
Taxon OID3300009679 Open in IMG/M
Scaffold IDGa0115105_10678009 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5153
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)33.2898Long. (o)-129.427Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F003834Metagenome / Metatranscriptome466N
F009561Metagenome / Metatranscriptome316N
F014069Metagenome / Metatranscriptome266N
F018266Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0115105_1067800916F009561AGGAGMTELKDEHLEVISKNKGKNYEIKKMVERLSDAKESVAVLGNAIECGFLHDKHSLILQEWIVEYEQLVDQLDVHLTEMRSHG*
Ga0115105_106780094F018266AGGAGGVFRVILENKFRENPINLSRAVKLLYNQDFTGSIRKENLLWWKKYFLKVIHLPILYPKKGYIQIVKIYRDKKPSIRVVTIPSASDKRELLVLNKIYGGNNG*
Ga0115105_106780097F014069AGGAGGMETVKAPIKERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPPYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE*
Ga0115105_106780098F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHDEVKTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKAIQMLDMSKEYCKNLLNAGQSLTTVWGVLNTEMGKEKINTNTIPKPEFLAITK*
Ga0115105_106780099F003677AGGMPNRKVIMVDKNLDYFEADVGKKVYEIEHETTYVTKWQVVAEDRDQAFDIWLEQSKEDLKTEDGTNCVCSYVKDYGQIGDTKEIAEIKYNKEDDEVYAE*
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