Scaffold Ga0115105_10023180

Overview

Basic Information

• Taxon OID: 3300009679
• Scaffold ID: Ga0115105_10023180
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 594
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 33.2898
  • Long. (^o): -129.427
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096204	Metagenome / Metatranscriptome	105	N
F096205	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115105_100231802	F096205	AGG	MSKGAKPRPLSVSYKQYSDNYEAIFGKKDETDENVLYDGLTEEEVTEAEKRIDIIGQNGNDGLHYDEVDGES*
Ga0115105_100231803	F096204	N/A	MENLEYIFPQDLKMWAKSAGRKFLEAQEKIKTLSTKNISASAYWDEDSNVAIVTEEGKIFTYGKKDK*